/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs/41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612417.41
BACK
SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs LANE 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612417.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 167133834 | 100.00 % | 83566917 | 100.00 % | 83566917 | 100.00 % |
| General Reads | 163875137 | 98.05 % | 82472969 | 98.69 % | 81402168 | 97.41 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 383955 | 0.23 % | 193582 | 0.23 % | 190373 | 0.23 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2874742 | 1.72 % | 900366 | 1.08 % | 1974376 | 2.36 % |
| Bisulfite_reads C2T | 83847282 | 50.17 % | 42182300 | 50.48 % | 41664982 | 49.86 % |
| Bisulfite_reads G2A | 80411810 | 48.11 % | 40484251 | 48.45 % | 39927559 | 47.78 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 62491070 |
| Average Unique | 74.78 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 6548585615 | 38.41 % | 2577427245 | 30.24 % | 3971158370 | 46.59 % |
| Base Counts Overall C | 1908999252 | 11.20 % | 79256076 | 0.93 % | 1829743176 | 21.47 % |
| Base Counts Overall G | 1937733636 | 11.37 % | 1874120110 | 21.99 % | 63613526 | 0.75 % |
| Base Counts Overall T | 6472152928 | 37.97 % | 3909020921 | 45.86 % | 2563132007 | 30.07 % |
| Base Counts Overall N | 180179637 | 1.06 % | 84001182 | 0.99 % | 96178455 | 1.13 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9947115275574774 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 73873431 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 83566917 |
| 101 | 83566917 |
Insert Size Plot
| Insert Size Histogram |
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