/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs/41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612430.41
BACK
SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs LANE 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612430.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 67587516 | 100.00 % | 33793758 | 100.00 % | 33793758 | 100.00 % |
| General Reads | 63241941 | 93.57 % | 31767298 | 94.00 % | 31474643 | 93.14 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2641 | 0.00 % | 1332 | 0.00 % | 1309 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4342934 | 6.43 % | 2025128 | 5.99 % | 2317806 | 6.86 % |
| Bisulfite_reads C2T | 32298581 | 47.79 % | 16212190 | 47.97 % | 16086391 | 47.60 % |
| Bisulfite_reads G2A | 30946001 | 45.79 % | 15556440 | 46.03 % | 15389561 | 45.54 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 20051685 |
| Average Unique | 59.34 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 2679063022 | 38.86 % | 1097522357 | 31.84 % | 1581540665 | 45.88 % |
| Base Counts Overall C | 763323988 | 11.07 % | 60267432 | 1.75 % | 703056556 | 20.40 % |
| Base Counts Overall G | 741122893 | 10.75 % | 695027144 | 20.16 % | 46095749 | 1.34 % |
| Base Counts Overall T | 2627143431 | 38.11 % | 1557423740 | 45.18 % | 1069719691 | 31.03 % |
| Base Counts Overall N | 83273298 | 1.21 % | 36722643 | 1.07 % | 46550655 | 1.35 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9615411502424007 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 24144863 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 33793758 |
| 101 | 33793758 |
Insert Size Plot
| Insert Size Histogram |
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