Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs
====================================================================================================================================================

Mapping Stats (Reads)
---------------------

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |1645126414                                  |100.00 %                                    |822563207                                   |100.00 %                                    |822563207                                   |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |1580816995                                  |96.09 %                                     |793541695                                   |96.47 %                                     |787275300                                   |95.71 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |1545581                                     |0.09 %                                      |779041                                      |0.09 %                                      |766540                                      |0.09 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |62763838                                    |3.82 %                                      |28242471                                    |3.43 %                                      |34521367                                    |4.20 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |804611041                                   |48.91 %                                     |403770027                                   |49.09 %                                     |400841014                                   |48.73 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |777751535                                   |47.28 %                                     |390550709                                   |47.48 %                                     |387200826                                   |47.07 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
----------------------

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |568101116                                  |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |69.06 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
---------------------

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |62654408213                                 |38.20 %                                     |24596650674                                 |30.32 %                                     |38057757539                                 |45.90 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |19399375038                                 |11.83 %                                     |1339752791                                  |1.65 %                                      |18059622247                                 |21.78 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |19292083119                                 |11.76 %                                     |18005162375                                 |22.19 %                                     |1286920744                                  |1.55 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |60915796118                                 |37.14 %                                     |36350297025                                 |44.81 %                                     |24565499093                                 |29.63 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |1773394500                                  |1.08 %                                      |835341813                                   |1.03 %                                      |938052687                                   |1.13 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
-------------------------

.. image:: K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs_mapq.png

Bisulfite Conversion Rate
-------------------------

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.99444794465419                           |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
---------------------

.. image:: K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs_isize.png

Correct Pairs
-------------

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |677419213                                  |
+--------------------------------------------+-------------------------------------------+

Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs Lane 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612417.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |167133834                                   |100.00 %                                    |83566917                                    |100.00 %                                    |83566917                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |163875137                                   |98.05 %                                     |82472969                                    |98.69 %                                     |81402168                                    |97.41 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |383955                                      |0.23 %                                      |193582                                      |0.23 %                                      |190373                                      |0.23 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |2874742                                     |1.72 %                                      |900366                                      |1.08 %                                      |1974376                                     |2.36 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |83847282                                    |50.17 %                                     |42182300                                    |50.48 %                                     |41664982                                    |49.86 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |80411810                                    |48.11 %                                     |40484251                                    |48.45 %                                     |39927559                                    |47.78 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |62491070                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |74.78 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |6548585615                                  |38.41 %                                     |2577427245                                  |30.24 %                                     |3971158370                                  |46.59 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1908999252                                  |11.20 %                                     |79256076                                    |0.93 %                                      |1829743176                                  |21.47 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1937733636                                  |11.37 %                                     |1874120110                                  |21.99 %                                     |63613526                                    |0.75 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |6472152928                                  |37.97 %                                     |3909020921                                  |45.86 %                                     |2563132007                                  |30.07 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |180179637                                   |1.06 %                                      |84001182                                    |0.99 %                                      |96178455                                    |1.13 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9947115275574774                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |73873431                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612417.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |83566917                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |83566917                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612417.41_isize.png

Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs Lane 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612430.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |67587516                                    |100.00 %                                    |33793758                                    |100.00 %                                    |33793758                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |63241941                                    |93.57 %                                     |31767298                                    |94.00 %                                     |31474643                                    |93.14 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |2641                                        |0.00 %                                      |1332                                        |0.00 %                                      |1309                                        |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |4342934                                     |6.43 %                                      |2025128                                     |5.99 %                                      |2317806                                     |6.86 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |32298581                                    |47.79 %                                     |16212190                                    |47.97 %                                     |16086391                                    |47.60 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |30946001                                    |45.79 %                                     |15556440                                    |46.03 %                                     |15389561                                    |45.54 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |20051685                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |59.34 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |2679063022                                  |38.86 %                                     |1097522357                                  |31.84 %                                     |1581540665                                  |45.88 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |763323988                                   |11.07 %                                     |60267432                                    |1.75 %                                      |703056556                                   |20.40 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |741122893                                   |10.75 %                                     |695027144                                   |20.16 %                                     |46095749                                    |1.34 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |2627143431                                  |38.11 %                                     |1557423740                                  |45.18 %                                     |1069719691                                  |31.03 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |83273298                                    |1.21 %                                      |36722643                                    |1.07 %                                      |46550655                                    |1.35 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9615411502424007                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |24144863                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612430.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |33793758                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |33793758                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612430.41_isize.png

Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs Lane 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612439.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |149284566                                   |100.00 %                                    |74642283                                    |100.00 %                                    |74642283                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |143615979                                   |96.20 %                                     |71879346                                    |96.30 %                                     |71736633                                    |96.11 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |3                                           |0.00 %                                      |1                                           |0.00 %                                      |2                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |5668584                                     |3.80 %                                      |2762936                                     |3.70 %                                      |2905648                                     |3.89 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |72204723                                    |48.37 %                                     |36137841                                    |48.41 %                                     |36066882                                    |48.32 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |71411259                                    |47.84 %                                     |35741506                                    |47.88 %                                     |35669753                                    |47.79 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |54373385                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |72.85 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |5142953128                                  |36.83 %                                     |1886837688                                  |28.22 %                                     |3256115440                                  |44.73 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1946008669                                  |13.94 %                                     |187971438                                   |2.81 %                                      |1758037231                                  |24.15 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1922811377                                  |13.77 %                                     |1708621443                                  |25.56 %                                     |214189934                                   |2.94 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |4802798000                                  |34.39 %                                     |2827357609                                  |42.29 %                                     |1975440391                                  |27.14 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |149861664                                   |1.07 %                                      |74652063                                    |1.12 %                                      |75209601                                    |1.03 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |64805393                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612439.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|78                                          |240896                                     |
+--------------------------------------------+-------------------------------------------+
|41                                          |181159                                     |
+--------------------------------------------+-------------------------------------------+
|27                                          |174909                                     |
+--------------------------------------------+-------------------------------------------+
|33                                          |176060                                     |
+--------------------------------------------+-------------------------------------------+
|39                                          |176299                                     |
+--------------------------------------------+-------------------------------------------+
|51                                          |185723                                     |
+--------------------------------------------+-------------------------------------------+
|52                                          |184859                                     |
+--------------------------------------------+-------------------------------------------+
|83                                          |116499                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |207196                                     |
+--------------------------------------------+-------------------------------------------+
|72                                          |236325                                     |
+--------------------------------------------+-------------------------------------------+
|89                                          |1754841                                    |
+--------------------------------------------+-------------------------------------------+
|70                                          |235877                                     |
+--------------------------------------------+-------------------------------------------+
|60                                          |215080                                     |
+--------------------------------------------+-------------------------------------------+
|55                                          |185488                                     |
+--------------------------------------------+-------------------------------------------+
|23                                          |173578                                     |
+--------------------------------------------+-------------------------------------------+
|69                                          |236033                                     |
+--------------------------------------------+-------------------------------------------+
|66                                          |200303                                     |
+--------------------------------------------+-------------------------------------------+
|58                                          |213970                                     |
+--------------------------------------------+-------------------------------------------+
|88                                          |930850                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |2169199                                    |
+--------------------------------------------+-------------------------------------------+
|73                                          |308700                                     |
+--------------------------------------------+-------------------------------------------+
|30                                          |171712                                     |
+--------------------------------------------+-------------------------------------------+
|59                                          |224462                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |172190                                     |
+--------------------------------------------+-------------------------------------------+
|68                                          |230687                                     |
+--------------------------------------------+-------------------------------------------+
|31                                          |173252                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |173563                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |179891                                     |
+--------------------------------------------+-------------------------------------------+
|79                                          |223309                                     |
+--------------------------------------------+-------------------------------------------+
|25                                          |191623                                     |
+--------------------------------------------+-------------------------------------------+
|98                                          |23375983                                   |
+--------------------------------------------+-------------------------------------------+
|43                                          |195265                                     |
+--------------------------------------------+-------------------------------------------+
|96                                          |4718784                                    |
+--------------------------------------------+-------------------------------------------+
|57                                          |196442                                     |
+--------------------------------------------+-------------------------------------------+
|49                                          |184274                                     |
+--------------------------------------------+-------------------------------------------+
|97                                          |18713481                                   |
+--------------------------------------------+-------------------------------------------+
|74                                          |347667                                     |
+--------------------------------------------+-------------------------------------------+
|82                                          |121288                                     |
+--------------------------------------------+-------------------------------------------+
|42                                          |187816                                     |
+--------------------------------------------+-------------------------------------------+
|81                                          |172440                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |192952                                     |
+--------------------------------------------+-------------------------------------------+
|67                                          |223657                                     |
+--------------------------------------------+-------------------------------------------+
|85                                          |223144                                     |
+--------------------------------------------+-------------------------------------------+
|91                                          |1954970                                    |
+--------------------------------------------+-------------------------------------------+
|77                                          |259721                                     |
+--------------------------------------------+-------------------------------------------+
|50                                          |186845                                     |
+--------------------------------------------+-------------------------------------------+
|36                                          |177111                                     |
+--------------------------------------------+-------------------------------------------+
|44                                          |191750                                     |
+--------------------------------------------+-------------------------------------------+
|76                                          |297064                                     |
+--------------------------------------------+-------------------------------------------+
|65                                          |201400                                     |
+--------------------------------------------+-------------------------------------------+
|53                                          |181743                                     |
+--------------------------------------------+-------------------------------------------+
|38                                          |180449                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |187586                                     |
+--------------------------------------------+-------------------------------------------+
|29                                          |173108                                     |
+--------------------------------------------+-------------------------------------------+
|37                                          |175782                                     |
+--------------------------------------------+-------------------------------------------+
|94                                          |1458371                                    |
+--------------------------------------------+-------------------------------------------+
|93                                          |1057477                                    |
+--------------------------------------------+-------------------------------------------+
|71                                          |252954                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |173306                                     |
+--------------------------------------------+-------------------------------------------+
|86                                          |334297                                     |
+--------------------------------------------+-------------------------------------------+
|48                                          |180739                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |480376                                     |
+--------------------------------------------+-------------------------------------------+
|75                                          |327824                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |178259                                     |
+--------------------------------------------+-------------------------------------------+
|62                                          |191924                                     |
+--------------------------------------------+-------------------------------------------+
|63                                          |192187                                     |
+--------------------------------------------+-------------------------------------------+
|34                                          |172440                                     |
+--------------------------------------------+-------------------------------------------+
|40                                          |180123                                     |
+--------------------------------------------+-------------------------------------------+
|92                                          |569278                                     |
+--------------------------------------------+-------------------------------------------+
|64                                          |196578                                     |
+--------------------------------------------+-------------------------------------------+
|90                                          |3975556                                    |
+--------------------------------------------+-------------------------------------------+
|21                                          |179395                                     |
+--------------------------------------------+-------------------------------------------+
|45                                          |181411                                     |
+--------------------------------------------+-------------------------------------------+
|84                                          |163372                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |178113                                     |
+--------------------------------------------+-------------------------------------------+
|20                                          |181275                                     |
+--------------------------------------------+-------------------------------------------+
|61                                          |203929                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |176763                                     |
+--------------------------------------------+-------------------------------------------+
|56                                          |191081                                     |
+--------------------------------------------+-------------------------------------------+
|78                                          |56152                                      |
+--------------------------------------------+-------------------------------------------+
|41                                          |35773                                      |
+--------------------------------------------+-------------------------------------------+
|27                                          |19693                                      |
+--------------------------------------------+-------------------------------------------+
|33                                          |28552                                      |
+--------------------------------------------+-------------------------------------------+
|39                                          |29360                                      |
+--------------------------------------------+-------------------------------------------+
|51                                          |31479                                      |
+--------------------------------------------+-------------------------------------------+
|52                                          |32925                                      |
+--------------------------------------------+-------------------------------------------+
|83                                          |65392                                      |
+--------------------------------------------+-------------------------------------------+
|80                                          |58190                                      |
+--------------------------------------------+-------------------------------------------+
|72                                          |77702                                      |
+--------------------------------------------+-------------------------------------------+
|89                                          |165957                                     |
+--------------------------------------------+-------------------------------------------+
|70                                          |156482                                     |
+--------------------------------------------+-------------------------------------------+
|60                                          |39380                                      |
+--------------------------------------------+-------------------------------------------+
|55                                          |35107                                      |
+--------------------------------------------+-------------------------------------------+
|23                                          |16308                                      |
+--------------------------------------------+-------------------------------------------+
|69                                          |177023                                     |
+--------------------------------------------+-------------------------------------------+
|66                                          |97518                                      |
+--------------------------------------------+-------------------------------------------+
|58                                          |38292                                      |
+--------------------------------------------+-------------------------------------------+
|88                                          |125152                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |1781643                                    |
+--------------------------------------------+-------------------------------------------+
|73                                          |63418                                      |
+--------------------------------------------+-------------------------------------------+
|30                                          |23222                                      |
+--------------------------------------------+-------------------------------------------+
|59                                          |38549                                      |
+--------------------------------------------+-------------------------------------------+
|22                                          |17405                                      |
+--------------------------------------------+-------------------------------------------+
|68                                          |165237                                     |
+--------------------------------------------+-------------------------------------------+
|31                                          |27718                                      |
+--------------------------------------------+-------------------------------------------+
|35                                          |27434                                      |
+--------------------------------------------+-------------------------------------------+
|26                                          |18674                                      |
+--------------------------------------------+-------------------------------------------+
|79                                          |56406                                      |
+--------------------------------------------+-------------------------------------------+
|25                                          |17709                                      |
+--------------------------------------------+-------------------------------------------+
|98                                          |14334929                                   |
+--------------------------------------------+-------------------------------------------+
|43                                          |30622                                      |
+--------------------------------------------+-------------------------------------------+
|96                                          |4940267                                    |
+--------------------------------------------+-------------------------------------------+
|57                                          |36917                                      |
+--------------------------------------------+-------------------------------------------+
|49                                          |33827                                      |
+--------------------------------------------+-------------------------------------------+
|97                                          |5269586                                    |
+--------------------------------------------+-------------------------------------------+
|74                                          |57820                                      |
+--------------------------------------------+-------------------------------------------+
|82                                          |61815                                      |
+--------------------------------------------+-------------------------------------------+
|42                                          |29367                                      |
+--------------------------------------------+-------------------------------------------+
|81                                          |59603                                      |
+--------------------------------------------+-------------------------------------------+
|24                                          |16331                                      |
+--------------------------------------------+-------------------------------------------+
|67                                          |129835                                     |
+--------------------------------------------+-------------------------------------------+
|85                                          |75409                                      |
+--------------------------------------------+-------------------------------------------+
|91                                          |238298                                     |
+--------------------------------------------+-------------------------------------------+
|77                                          |54354                                      |
+--------------------------------------------+-------------------------------------------+
|50                                          |32671                                      |
+--------------------------------------------+-------------------------------------------+
|36                                          |24709                                      |
+--------------------------------------------+-------------------------------------------+
|44                                          |32988                                      |
+--------------------------------------------+-------------------------------------------+
|76                                          |54524                                      |
+--------------------------------------------+-------------------------------------------+
|65                                          |83096                                      |
+--------------------------------------------+-------------------------------------------+
|99                                          |42884930                                   |
+--------------------------------------------+-------------------------------------------+
|53                                          |33688                                      |
+--------------------------------------------+-------------------------------------------+
|38                                          |26215                                      |
+--------------------------------------------+-------------------------------------------+
|54                                          |34059                                      |
+--------------------------------------------+-------------------------------------------+
|29                                          |21629                                      |
+--------------------------------------------+-------------------------------------------+
|37                                          |25225                                      |
+--------------------------------------------+-------------------------------------------+
|94                                          |635236                                     |
+--------------------------------------------+-------------------------------------------+
|93                                          |373612                                     |
+--------------------------------------------+-------------------------------------------+
|71                                          |109010                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |27594                                      |
+--------------------------------------------+-------------------------------------------+
|86                                          |81803                                      |
+--------------------------------------------+-------------------------------------------+
|48                                          |37398                                      |
+--------------------------------------------+-------------------------------------------+
|87                                          |95526                                      |
+--------------------------------------------+-------------------------------------------+
|75                                          |54343                                      |
+--------------------------------------------+-------------------------------------------+
|47                                          |38761                                      |
+--------------------------------------------+-------------------------------------------+
|62                                          |60316                                      |
+--------------------------------------------+-------------------------------------------+
|63                                          |73446                                      |
+--------------------------------------------+-------------------------------------------+
|34                                          |28187                                      |
+--------------------------------------------+-------------------------------------------+
|40                                          |32638                                      |
+--------------------------------------------+-------------------------------------------+
|92                                          |225781                                     |
+--------------------------------------------+-------------------------------------------+
|64                                          |78268                                      |
+--------------------------------------------+-------------------------------------------+
|90                                          |261889                                     |
+--------------------------------------------+-------------------------------------------+
|21                                          |16461                                      |
+--------------------------------------------+-------------------------------------------+
|45                                          |35976                                      |
+--------------------------------------------+-------------------------------------------+
|84                                          |69622                                      |
+--------------------------------------------+-------------------------------------------+
|46                                          |39577                                      |
+--------------------------------------------+-------------------------------------------+
|20                                          |15914                                      |
+--------------------------------------------+-------------------------------------------+
|61                                          |46033                                      |
+--------------------------------------------+-------------------------------------------+
|28                                          |21425                                      |
+--------------------------------------------+-------------------------------------------+
|56                                          |36901                                      |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612439.41_isize.png

Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs Lane 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612274.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |149987420                                   |100.00 %                                    |74993710                                    |100.00 %                                    |74993710                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |144445532                                   |96.31 %                                     |72321235                                    |96.44 %                                     |72124297                                    |96.17 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |1                                           |0.00 %                                      |0                                           |0.00 %                                      |1                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |5541887                                     |3.69 %                                      |2672475                                     |3.56 %                                      |2869412                                     |3.83 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |72662650                                    |48.45 %                                     |36379744                                    |48.51 %                                     |36282906                                    |48.38 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |71782883                                    |47.86 %                                     |35941491                                    |47.93 %                                     |35841392                                    |47.79 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |54787628                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |73.06 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |5176550862                                  |36.90 %                                     |1898254229                                  |28.29 %                                     |3278296633                                  |44.81 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1946295682                                  |13.87 %                                     |185545158                                   |2.76 %                                      |1760750524                                  |24.07 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1916811543                                  |13.66 %                                     |1709207787                                  |25.47 %                                     |207603756                                   |2.84 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |4837156505                                  |34.48 %                                     |2842980055                                  |42.36 %                                     |1994176450                                  |27.26 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |150554366                                   |1.07 %                                      |75001640                                    |1.12 %                                      |75552726                                    |1.03 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |65278455                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612274.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|78                                          |238710                                     |
+--------------------------------------------+-------------------------------------------+
|41                                          |183989                                     |
+--------------------------------------------+-------------------------------------------+
|27                                          |178249                                     |
+--------------------------------------------+-------------------------------------------+
|33                                          |179711                                     |
+--------------------------------------------+-------------------------------------------+
|39                                          |179600                                     |
+--------------------------------------------+-------------------------------------------+
|51                                          |189169                                     |
+--------------------------------------------+-------------------------------------------+
|52                                          |187287                                     |
+--------------------------------------------+-------------------------------------------+
|83                                          |119969                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |209610                                     |
+--------------------------------------------+-------------------------------------------+
|72                                          |237093                                     |
+--------------------------------------------+-------------------------------------------+
|89                                          |1765678                                    |
+--------------------------------------------+-------------------------------------------+
|70                                          |236971                                     |
+--------------------------------------------+-------------------------------------------+
|60                                          |218456                                     |
+--------------------------------------------+-------------------------------------------+
|55                                          |188609                                     |
+--------------------------------------------+-------------------------------------------+
|23                                          |177323                                     |
+--------------------------------------------+-------------------------------------------+
|69                                          |235829                                     |
+--------------------------------------------+-------------------------------------------+
|66                                          |204589                                     |
+--------------------------------------------+-------------------------------------------+
|58                                          |217629                                     |
+--------------------------------------------+-------------------------------------------+
|88                                          |942620                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |2193379                                    |
+--------------------------------------------+-------------------------------------------+
|73                                          |314873                                     |
+--------------------------------------------+-------------------------------------------+
|30                                          |172980                                     |
+--------------------------------------------+-------------------------------------------+
|59                                          |227824                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |175089                                     |
+--------------------------------------------+-------------------------------------------+
|68                                          |234674                                     |
+--------------------------------------------+-------------------------------------------+
|31                                          |176499                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |176829                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |184032                                     |
+--------------------------------------------+-------------------------------------------+
|79                                          |222751                                     |
+--------------------------------------------+-------------------------------------------+
|25                                          |194262                                     |
+--------------------------------------------+-------------------------------------------+
|98                                          |23372093                                   |
+--------------------------------------------+-------------------------------------------+
|43                                          |198016                                     |
+--------------------------------------------+-------------------------------------------+
|96                                          |4703105                                    |
+--------------------------------------------+-------------------------------------------+
|57                                          |199815                                     |
+--------------------------------------------+-------------------------------------------+
|49                                          |185797                                     |
+--------------------------------------------+-------------------------------------------+
|97                                          |18777579                                   |
+--------------------------------------------+-------------------------------------------+
|74                                          |321388                                     |
+--------------------------------------------+-------------------------------------------+
|82                                          |124385                                     |
+--------------------------------------------+-------------------------------------------+
|42                                          |190877                                     |
+--------------------------------------------+-------------------------------------------+
|81                                          |176757                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |196435                                     |
+--------------------------------------------+-------------------------------------------+
|67                                          |223335                                     |
+--------------------------------------------+-------------------------------------------+
|85                                          |225992                                     |
+--------------------------------------------+-------------------------------------------+
|91                                          |1964276                                    |
+--------------------------------------------+-------------------------------------------+
|77                                          |270871                                     |
+--------------------------------------------+-------------------------------------------+
|50                                          |190644                                     |
+--------------------------------------------+-------------------------------------------+
|36                                          |179564                                     |
+--------------------------------------------+-------------------------------------------+
|44                                          |195523                                     |
+--------------------------------------------+-------------------------------------------+
|76                                          |302111                                     |
+--------------------------------------------+-------------------------------------------+
|65                                          |204298                                     |
+--------------------------------------------+-------------------------------------------+
|53                                          |184344                                     |
+--------------------------------------------+-------------------------------------------+
|38                                          |183577                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |191907                                     |
+--------------------------------------------+-------------------------------------------+
|29                                          |176096                                     |
+--------------------------------------------+-------------------------------------------+
|37                                          |179124                                     |
+--------------------------------------------+-------------------------------------------+
|94                                          |1474814                                    |
+--------------------------------------------+-------------------------------------------+
|93                                          |1066988                                    |
+--------------------------------------------+-------------------------------------------+
|71                                          |253736                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |176242                                     |
+--------------------------------------------+-------------------------------------------+
|86                                          |341478                                     |
+--------------------------------------------+-------------------------------------------+
|48                                          |184432                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |488303                                     |
+--------------------------------------------+-------------------------------------------+
|75                                          |328063                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |180644                                     |
+--------------------------------------------+-------------------------------------------+
|62                                          |194720                                     |
+--------------------------------------------+-------------------------------------------+
|63                                          |194740                                     |
+--------------------------------------------+-------------------------------------------+
|34                                          |174990                                     |
+--------------------------------------------+-------------------------------------------+
|40                                          |183712                                     |
+--------------------------------------------+-------------------------------------------+
|92                                          |572709                                     |
+--------------------------------------------+-------------------------------------------+
|64                                          |198879                                     |
+--------------------------------------------+-------------------------------------------+
|90                                          |4019058                                    |
+--------------------------------------------+-------------------------------------------+
|21                                          |182960                                     |
+--------------------------------------------+-------------------------------------------+
|45                                          |184097                                     |
+--------------------------------------------+-------------------------------------------+
|84                                          |166717                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |181986                                     |
+--------------------------------------------+-------------------------------------------+
|20                                          |184153                                     |
+--------------------------------------------+-------------------------------------------+
|61                                          |206979                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |178774                                     |
+--------------------------------------------+-------------------------------------------+
|56                                          |192344                                     |
+--------------------------------------------+-------------------------------------------+
|78                                          |55301                                      |
+--------------------------------------------+-------------------------------------------+
|41                                          |35982                                      |
+--------------------------------------------+-------------------------------------------+
|27                                          |18479                                      |
+--------------------------------------------+-------------------------------------------+
|33                                          |25827                                      |
+--------------------------------------------+-------------------------------------------+
|39                                          |29297                                      |
+--------------------------------------------+-------------------------------------------+
|51                                          |31399                                      |
+--------------------------------------------+-------------------------------------------+
|52                                          |32872                                      |
+--------------------------------------------+-------------------------------------------+
|83                                          |65036                                      |
+--------------------------------------------+-------------------------------------------+
|80                                          |58278                                      |
+--------------------------------------------+-------------------------------------------+
|72                                          |79756                                      |
+--------------------------------------------+-------------------------------------------+
|89                                          |163626                                     |
+--------------------------------------------+-------------------------------------------+
|70                                          |145706                                     |
+--------------------------------------------+-------------------------------------------+
|60                                          |38855                                      |
+--------------------------------------------+-------------------------------------------+
|55                                          |35080                                      |
+--------------------------------------------+-------------------------------------------+
|23                                          |15337                                      |
+--------------------------------------------+-------------------------------------------+
|69                                          |178041                                     |
+--------------------------------------------+-------------------------------------------+
|66                                          |95597                                      |
+--------------------------------------------+-------------------------------------------+
|58                                          |38636                                      |
+--------------------------------------------+-------------------------------------------+
|88                                          |126150                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |1792207                                    |
+--------------------------------------------+-------------------------------------------+
|73                                          |64269                                      |
+--------------------------------------------+-------------------------------------------+
|30                                          |21727                                      |
+--------------------------------------------+-------------------------------------------+
|59                                          |38213                                      |
+--------------------------------------------+-------------------------------------------+
|22                                          |15681                                      |
+--------------------------------------------+-------------------------------------------+
|68                                          |168839                                     |
+--------------------------------------------+-------------------------------------------+
|31                                          |24156                                      |
+--------------------------------------------+-------------------------------------------+
|35                                          |26595                                      |
+--------------------------------------------+-------------------------------------------+
|26                                          |18568                                      |
+--------------------------------------------+-------------------------------------------+
|79                                          |56616                                      |
+--------------------------------------------+-------------------------------------------+
|25                                          |17401                                      |
+--------------------------------------------+-------------------------------------------+
|98                                          |14341001                                   |
+--------------------------------------------+-------------------------------------------+
|43                                          |30508                                      |
+--------------------------------------------+-------------------------------------------+
|96                                          |4963444                                    |
+--------------------------------------------+-------------------------------------------+
|57                                          |36707                                      |
+--------------------------------------------+-------------------------------------------+
|49                                          |33292                                      |
+--------------------------------------------+-------------------------------------------+
|97                                          |5336586                                    |
+--------------------------------------------+-------------------------------------------+
|74                                          |57524                                      |
+--------------------------------------------+-------------------------------------------+
|82                                          |61379                                      |
+--------------------------------------------+-------------------------------------------+
|42                                          |30549                                      |
+--------------------------------------------+-------------------------------------------+
|81                                          |60098                                      |
+--------------------------------------------+-------------------------------------------+
|24                                          |16270                                      |
+--------------------------------------------+-------------------------------------------+
|67                                          |119268                                     |
+--------------------------------------------+-------------------------------------------+
|85                                          |74827                                      |
+--------------------------------------------+-------------------------------------------+
|91                                          |237606                                     |
+--------------------------------------------+-------------------------------------------+
|77                                          |54813                                      |
+--------------------------------------------+-------------------------------------------+
|50                                          |32419                                      |
+--------------------------------------------+-------------------------------------------+
|36                                          |24860                                      |
+--------------------------------------------+-------------------------------------------+
|44                                          |32433                                      |
+--------------------------------------------+-------------------------------------------+
|76                                          |54087                                      |
+--------------------------------------------+-------------------------------------------+
|65                                          |80868                                      |
+--------------------------------------------+-------------------------------------------+
|99                                          |43168095                                   |
+--------------------------------------------+-------------------------------------------+
|53                                          |33055                                      |
+--------------------------------------------+-------------------------------------------+
|38                                          |25729                                      |
+--------------------------------------------+-------------------------------------------+
|54                                          |34051                                      |
+--------------------------------------------+-------------------------------------------+
|29                                          |20307                                      |
+--------------------------------------------+-------------------------------------------+
|37                                          |25359                                      |
+--------------------------------------------+-------------------------------------------+
|94                                          |646677                                     |
+--------------------------------------------+-------------------------------------------+
|93                                          |378535                                     |
+--------------------------------------------+-------------------------------------------+
|71                                          |109369                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |26029                                      |
+--------------------------------------------+-------------------------------------------+
|86                                          |83182                                      |
+--------------------------------------------+-------------------------------------------+
|48                                          |36255                                      |
+--------------------------------------------+-------------------------------------------+
|87                                          |97363                                      |
+--------------------------------------------+-------------------------------------------+
|75                                          |54279                                      |
+--------------------------------------------+-------------------------------------------+
|47                                          |38079                                      |
+--------------------------------------------+-------------------------------------------+
|62                                          |58315                                      |
+--------------------------------------------+-------------------------------------------+
|63                                          |73019                                      |
+--------------------------------------------+-------------------------------------------+
|34                                          |26946                                      |
+--------------------------------------------+-------------------------------------------+
|40                                          |32512                                      |
+--------------------------------------------+-------------------------------------------+
|92                                          |225844                                     |
+--------------------------------------------+-------------------------------------------+
|64                                          |74804                                      |
+--------------------------------------------+-------------------------------------------+
|90                                          |259032                                     |
+--------------------------------------------+-------------------------------------------+
|21                                          |15428                                      |
+--------------------------------------------+-------------------------------------------+
|45                                          |35173                                      |
+--------------------------------------------+-------------------------------------------+
|84                                          |69544                                      |
+--------------------------------------------+-------------------------------------------+
|46                                          |37908                                      |
+--------------------------------------------+-------------------------------------------+
|20                                          |15257                                      |
+--------------------------------------------+-------------------------------------------+
|61                                          |44722                                      |
+--------------------------------------------+-------------------------------------------+
|28                                          |20372                                      |
+--------------------------------------------+-------------------------------------------+
|56                                          |36404                                      |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612274.41_isize.png

Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs Lane 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612269.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |60516134                                    |100.00 %                                    |30258067                                    |100.00 %                                    |30258067                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |56406791                                    |93.21 %                                     |28191120                                    |93.17 %                                     |28215671                                    |93.25 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |2251                                        |0.00 %                                      |1129                                        |0.00 %                                      |1122                                        |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |4107092                                     |6.79 %                                      |2065818                                     |6.83 %                                      |2041274                                     |6.75 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |28778262                                    |47.55 %                                     |14373090                                    |47.50 %                                     |14405172                                    |47.61 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |27630780                                    |45.66 %                                     |13819159                                    |45.67 %                                     |13811621                                    |45.65 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |17637399                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |58.29 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |2407088020                                  |39.00 %                                     |985579367                                   |31.93 %                                     |1421508653                                  |46.06 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |676586336                                   |10.96 %                                     |49096997                                    |1.59 %                                      |627489339                                   |20.33 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |647633996                                   |10.49 %                                     |607323403                                   |19.68 %                                     |40310593                                    |1.31 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |2369627354                                  |38.39 %                                     |1412805198                                  |45.78 %                                     |956822156                                   |31.00 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |71709962                                    |1.16 %                                      |31517869                                    |1.02 %                                      |40192093                                    |1.30 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9653543834239583                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |21264490                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612269.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |30258067                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |30258067                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612269.41_isize.png

Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs Lane 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612158.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |164801788                                   |100.00 %                                    |82400894                                    |100.00 %                                    |82400894                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |161525899                                   |98.01 %                                     |81260352                                    |98.62 %                                     |80265547                                    |97.41 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |379856                                      |0.23 %                                      |191452                                      |0.23 %                                      |188404                                      |0.23 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |2896033                                     |1.76 %                                      |949090                                      |1.15 %                                      |1946943                                     |2.36 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |82640251                                    |50.15 %                                     |41558643                                    |50.43 %                                     |41081608                                    |49.86 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |79265504                                    |48.10 %                                     |39893161                                    |48.41 %                                     |39372343                                    |47.78 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |61536797                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |74.68 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |6449954135                                  |38.37 %                                     |2537516963                                  |30.19 %                                     |3912437172                                  |46.55 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1889007527                                  |11.24 %                                     |80404973                                    |0.96 %                                      |1808602554                                  |21.52 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1912328319                                  |11.38 %                                     |1852175809                                  |22.04 %                                     |60152510                                    |0.72 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |6384216134                                  |37.98 %                                     |3852218749                                  |45.83 %                                     |2531997385                                  |30.13 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |174276261                                   |1.04 %                                      |82574694                                    |0.98 %                                      |91701567                                    |1.09 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9944938887728105                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |72801359                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612158.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |82400894                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |82400894                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612158.41_isize.png

Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs Lane 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612205.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |61924376                                    |100.00 %                                    |30962188                                    |100.00 %                                    |30962188                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |57569754                                    |92.97 %                                     |28802043                                    |93.02 %                                     |28767711                                    |92.91 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |2340                                        |0.00 %                                      |1170                                        |0.00 %                                      |1170                                        |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |4352282                                     |7.03 %                                      |2158975                                     |6.97 %                                      |2193307                                     |7.08 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |29420593                                    |47.51 %                                     |14714661                                    |47.52 %                                     |14705932                                    |47.50 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |28151501                                    |45.46 %                                     |14088552                                    |45.50 %                                     |14062949                                    |45.42 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |18031492                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |58.24 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |2459228626                                  |38.93 %                                     |1015207424                                  |32.15 %                                     |1444021202                                  |45.72 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |696576733                                   |11.03 %                                     |59213221                                    |1.87 %                                      |637363512                                   |20.18 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |692120139                                   |10.96 %                                     |631831123                                   |20.01 %                                     |60289016                                    |1.91 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |2400086625                                  |38.00 %                                     |1420731401                                  |44.99 %                                     |979355224                                   |31.01 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |68274229                                    |1.08 %                                      |31160007                                    |0.99 %                                      |37114222                                    |1.18 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9942888363201376                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |21890738                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612205.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |30962188                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |30962188                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612205.41_isize.png

Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs Lane 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612251.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |147020870                                   |100.00 %                                    |73510435                                    |100.00 %                                    |73510435                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |141449569                                   |96.21 %                                     |70820454                                    |96.34 %                                     |70629115                                    |96.08 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |3                                           |0.00 %                                      |1                                           |0.00 %                                      |2                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |5571298                                     |3.79 %                                      |2689980                                     |3.66 %                                      |2881318                                     |3.92 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |71121515                                    |48.38 %                                     |35607039                                    |48.44 %                                     |35514476                                    |48.31 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |70328057                                    |47.84 %                                     |35213416                                    |47.90 %                                     |35114641                                    |47.77 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |53517642                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |72.80 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |5062712058                                  |36.79 %                                     |1857202822                                  |28.18 %                                     |3205509236                                  |44.69 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1920767661                                  |13.96 %                                     |185032108                                   |2.81 %                                      |1735735553                                  |24.20 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1894899146                                  |13.77 %                                     |1686695849                                  |25.59 %                                     |208203297                                   |2.90 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |4735366158                                  |34.41 %                                     |2786965384                                  |42.29 %                                     |1948400774                                  |27.17 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |148487253                                   |1.08 %                                      |74367947                                    |1.13 %                                      |74119306                                    |1.03 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |63817158                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612251.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|78                                          |232782                                     |
+--------------------------------------------+-------------------------------------------+
|41                                          |178030                                     |
+--------------------------------------------+-------------------------------------------+
|27                                          |170024                                     |
+--------------------------------------------+-------------------------------------------+
|33                                          |170395                                     |
+--------------------------------------------+-------------------------------------------+
|39                                          |170404                                     |
+--------------------------------------------+-------------------------------------------+
|51                                          |181829                                     |
+--------------------------------------------+-------------------------------------------+
|52                                          |180682                                     |
+--------------------------------------------+-------------------------------------------+
|83                                          |112818                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |202399                                     |
+--------------------------------------------+-------------------------------------------+
|72                                          |229499                                     |
+--------------------------------------------+-------------------------------------------+
|89                                          |1712760                                    |
+--------------------------------------------+-------------------------------------------+
|70                                          |228580                                     |
+--------------------------------------------+-------------------------------------------+
|60                                          |211317                                     |
+--------------------------------------------+-------------------------------------------+
|55                                          |181787                                     |
+--------------------------------------------+-------------------------------------------+
|23                                          |168393                                     |
+--------------------------------------------+-------------------------------------------+
|69                                          |230007                                     |
+--------------------------------------------+-------------------------------------------+
|66                                          |195810                                     |
+--------------------------------------------+-------------------------------------------+
|58                                          |211163                                     |
+--------------------------------------------+-------------------------------------------+
|88                                          |907711                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |2123494                                    |
+--------------------------------------------+-------------------------------------------+
|73                                          |299588                                     |
+--------------------------------------------+-------------------------------------------+
|30                                          |166230                                     |
+--------------------------------------------+-------------------------------------------+
|59                                          |220874                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |167742                                     |
+--------------------------------------------+-------------------------------------------+
|68                                          |226951                                     |
+--------------------------------------------+-------------------------------------------+
|31                                          |168487                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |169723                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |174738                                     |
+--------------------------------------------+-------------------------------------------+
|79                                          |219266                                     |
+--------------------------------------------+-------------------------------------------+
|25                                          |185451                                     |
+--------------------------------------------+-------------------------------------------+
|98                                          |23237375                                   |
+--------------------------------------------+-------------------------------------------+
|43                                          |190912                                     |
+--------------------------------------------+-------------------------------------------+
|96                                          |4641202                                    |
+--------------------------------------------+-------------------------------------------+
|57                                          |192706                                     |
+--------------------------------------------+-------------------------------------------+
|49                                          |178751                                     |
+--------------------------------------------+-------------------------------------------+
|97                                          |18405753                                   |
+--------------------------------------------+-------------------------------------------+
|74                                          |315996                                     |
+--------------------------------------------+-------------------------------------------+
|82                                          |118011                                     |
+--------------------------------------------+-------------------------------------------+
|42                                          |183987                                     |
+--------------------------------------------+-------------------------------------------+
|81                                          |170071                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |187838                                     |
+--------------------------------------------+-------------------------------------------+
|67                                          |214781                                     |
+--------------------------------------------+-------------------------------------------+
|85                                          |216434                                     |
+--------------------------------------------+-------------------------------------------+
|91                                          |1923798                                    |
+--------------------------------------------+-------------------------------------------+
|77                                          |265236                                     |
+--------------------------------------------+-------------------------------------------+
|50                                          |183865                                     |
+--------------------------------------------+-------------------------------------------+
|36                                          |173213                                     |
+--------------------------------------------+-------------------------------------------+
|44                                          |188011                                     |
+--------------------------------------------+-------------------------------------------+
|76                                          |295631                                     |
+--------------------------------------------+-------------------------------------------+
|65                                          |196800                                     |
+--------------------------------------------+-------------------------------------------+
|53                                          |178369                                     |
+--------------------------------------------+-------------------------------------------+
|38                                          |175525                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |185087                                     |
+--------------------------------------------+-------------------------------------------+
|29                                          |168137                                     |
+--------------------------------------------+-------------------------------------------+
|37                                          |170464                                     |
+--------------------------------------------+-------------------------------------------+
|94                                          |1436896                                    |
+--------------------------------------------+-------------------------------------------+
|93                                          |1036447                                    |
+--------------------------------------------+-------------------------------------------+
|71                                          |247037                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |168423                                     |
+--------------------------------------------+-------------------------------------------+
|86                                          |324718                                     |
+--------------------------------------------+-------------------------------------------+
|48                                          |177012                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |465248                                     |
+--------------------------------------------+-------------------------------------------+
|75                                          |321930                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |173488                                     |
+--------------------------------------------+-------------------------------------------+
|62                                          |187430                                     |
+--------------------------------------------+-------------------------------------------+
|63                                          |186093                                     |
+--------------------------------------------+-------------------------------------------+
|34                                          |167355                                     |
+--------------------------------------------+-------------------------------------------+
|40                                          |173927                                     |
+--------------------------------------------+-------------------------------------------+
|92                                          |555795                                     |
+--------------------------------------------+-------------------------------------------+
|64                                          |191746                                     |
+--------------------------------------------+-------------------------------------------+
|90                                          |3918098                                    |
+--------------------------------------------+-------------------------------------------+
|21                                          |174992                                     |
+--------------------------------------------+-------------------------------------------+
|45                                          |177972                                     |
+--------------------------------------------+-------------------------------------------+
|84                                          |158964                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |175429                                     |
+--------------------------------------------+-------------------------------------------+
|20                                          |178101                                     |
+--------------------------------------------+-------------------------------------------+
|61                                          |199076                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |171390                                     |
+--------------------------------------------+-------------------------------------------+
|56                                          |185981                                     |
+--------------------------------------------+-------------------------------------------+
|78                                          |54305                                      |
+--------------------------------------------+-------------------------------------------+
|41                                          |34205                                      |
+--------------------------------------------+-------------------------------------------+
|27                                          |18467                                      |
+--------------------------------------------+-------------------------------------------+
|33                                          |25428                                      |
+--------------------------------------------+-------------------------------------------+
|39                                          |28350                                      |
+--------------------------------------------+-------------------------------------------+
|51                                          |30236                                      |
+--------------------------------------------+-------------------------------------------+
|52                                          |31605                                      |
+--------------------------------------------+-------------------------------------------+
|83                                          |62615                                      |
+--------------------------------------------+-------------------------------------------+
|80                                          |55588                                      |
+--------------------------------------------+-------------------------------------------+
|72                                          |78880                                      |
+--------------------------------------------+-------------------------------------------+
|89                                          |160216                                     |
+--------------------------------------------+-------------------------------------------+
|70                                          |161253                                     |
+--------------------------------------------+-------------------------------------------+
|60                                          |38940                                      |
+--------------------------------------------+-------------------------------------------+
|55                                          |33811                                      |
+--------------------------------------------+-------------------------------------------+
|23                                          |15032                                      |
+--------------------------------------------+-------------------------------------------+
|69                                          |178560                                     |
+--------------------------------------------+-------------------------------------------+
|66                                          |94604                                      |
+--------------------------------------------+-------------------------------------------+
|58                                          |37312                                      |
+--------------------------------------------+-------------------------------------------+
|88                                          |121499                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |1727577                                    |
+--------------------------------------------+-------------------------------------------+
|73                                          |62738                                      |
+--------------------------------------------+-------------------------------------------+
|30                                          |21470                                      |
+--------------------------------------------+-------------------------------------------+
|59                                          |37586                                      |
+--------------------------------------------+-------------------------------------------+
|22                                          |15277                                      |
+--------------------------------------------+-------------------------------------------+
|68                                          |159397                                     |
+--------------------------------------------+-------------------------------------------+
|31                                          |23642                                      |
+--------------------------------------------+-------------------------------------------+
|35                                          |26072                                      |
+--------------------------------------------+-------------------------------------------+
|26                                          |17843                                      |
+--------------------------------------------+-------------------------------------------+
|79                                          |55121                                      |
+--------------------------------------------+-------------------------------------------+
|25                                          |16763                                      |
+--------------------------------------------+-------------------------------------------+
|98                                          |14131413                                   |
+--------------------------------------------+-------------------------------------------+
|43                                          |29753                                      |
+--------------------------------------------+-------------------------------------------+
|96                                          |4847051                                    |
+--------------------------------------------+-------------------------------------------+
|57                                          |35433                                      |
+--------------------------------------------+-------------------------------------------+
|49                                          |32635                                      |
+--------------------------------------------+-------------------------------------------+
|97                                          |5165487                                    |
+--------------------------------------------+-------------------------------------------+
|74                                          |56758                                      |
+--------------------------------------------+-------------------------------------------+
|82                                          |58596                                      |
+--------------------------------------------+-------------------------------------------+
|42                                          |28469                                      |
+--------------------------------------------+-------------------------------------------+
|81                                          |57426                                      |
+--------------------------------------------+-------------------------------------------+
|24                                          |15578                                      |
+--------------------------------------------+-------------------------------------------+
|67                                          |123023                                     |
+--------------------------------------------+-------------------------------------------+
|85                                          |71304                                      |
+--------------------------------------------+-------------------------------------------+
|91                                          |233043                                     |
+--------------------------------------------+-------------------------------------------+
|77                                          |52509                                      |
+--------------------------------------------+-------------------------------------------+
|50                                          |31626                                      |
+--------------------------------------------+-------------------------------------------+
|36                                          |24215                                      |
+--------------------------------------------+-------------------------------------------+
|44                                          |31590                                      |
+--------------------------------------------+-------------------------------------------+
|76                                          |51989                                      |
+--------------------------------------------+-------------------------------------------+
|65                                          |79322                                      |
+--------------------------------------------+-------------------------------------------+
|99                                          |42377471                                   |
+--------------------------------------------+-------------------------------------------+
|53                                          |32644                                      |
+--------------------------------------------+-------------------------------------------+
|38                                          |25379                                      |
+--------------------------------------------+-------------------------------------------+
|54                                          |33073                                      |
+--------------------------------------------+-------------------------------------------+
|29                                          |19984                                      |
+--------------------------------------------+-------------------------------------------+
|37                                          |24193                                      |
+--------------------------------------------+-------------------------------------------+
|94                                          |622361                                     |
+--------------------------------------------+-------------------------------------------+
|93                                          |361353                                     |
+--------------------------------------------+-------------------------------------------+
|71                                          |107808                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |25540                                      |
+--------------------------------------------+-------------------------------------------+
|86                                          |79911                                      |
+--------------------------------------------+-------------------------------------------+
|48                                          |35719                                      |
+--------------------------------------------+-------------------------------------------+
|87                                          |92090                                      |
+--------------------------------------------+-------------------------------------------+
|75                                          |52912                                      |
+--------------------------------------------+-------------------------------------------+
|47                                          |36997                                      |
+--------------------------------------------+-------------------------------------------+
|62                                          |57147                                      |
+--------------------------------------------+-------------------------------------------+
|63                                          |72167                                      |
+--------------------------------------------+-------------------------------------------+
|34                                          |26094                                      |
+--------------------------------------------+-------------------------------------------+
|40                                          |31082                                      |
+--------------------------------------------+-------------------------------------------+
|92                                          |217152                                     |
+--------------------------------------------+-------------------------------------------+
|64                                          |75435                                      |
+--------------------------------------------+-------------------------------------------+
|90                                          |255074                                     |
+--------------------------------------------+-------------------------------------------+
|21                                          |14656                                      |
+--------------------------------------------+-------------------------------------------+
|45                                          |34525                                      |
+--------------------------------------------+-------------------------------------------+
|84                                          |65921                                      |
+--------------------------------------------+-------------------------------------------+
|46                                          |37477                                      |
+--------------------------------------------+-------------------------------------------+
|20                                          |14924                                      |
+--------------------------------------------+-------------------------------------------+
|61                                          |44027                                      |
+--------------------------------------------+-------------------------------------------+
|28                                          |19856                                      |
+--------------------------------------------+-------------------------------------------+
|56                                          |35851                                      |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612251.41_isize.png

Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs Lane 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612308.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |63123168                                    |100.00 %                                    |31561584                                    |100.00 %                                    |31561584                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |59100235                                    |93.63 %                                     |29623706                                    |93.86 %                                     |29476529                                    |93.39 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |2225                                        |0.00 %                                      |1117                                        |0.00 %                                      |1108                                        |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |4020708                                     |6.37 %                                      |1936761                                     |6.14 %                                      |2083947                                     |6.60 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |30204943                                    |47.85 %                                     |15136355                                    |47.96 %                                     |15068588                                    |47.74 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |28897517                                    |45.78 %                                     |14488468                                    |45.91 %                                     |14409049                                    |45.65 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |18598890                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |58.93 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |2508233018                                  |38.96 %                                     |1035654156                                  |32.17 %                                     |1472578862                                  |45.74 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |708412185                                   |11.00 %                                     |59871844                                    |1.86 %                                      |648540341                                   |20.15 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |710338722                                   |11.03 %                                     |649149499                                   |20.16 %                                     |61189223                                    |1.90 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |2441255404                                  |37.92 %                                     |1442730670                                  |44.82 %                                     |998524734                                   |31.02 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |70323807                                    |1.09 %                                      |31875399                                    |0.99 %                                      |38448408                                    |1.19 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9955090715402599                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |22535230                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612308.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |31561584                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |31561584                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612308.41_isize.png

Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs Lane 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612242.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |59625698                                    |100.00 %                                    |29812849                                    |100.00 %                                    |29812849                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |55691130                                    |93.40 %                                     |27887029                                    |93.54 %                                     |27804101                                    |93.26 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |2294                                        |0.00 %                                      |1155                                        |0.00 %                                      |1139                                        |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |3932274                                     |6.59 %                                      |1924665                                     |6.46 %                                      |2007609                                     |6.73 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |28447182                                    |47.71 %                                     |14238471                                    |47.76 %                                     |14208711                                    |47.66 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |27246242                                    |45.70 %                                     |13649713                                    |45.78 %                                     |13596529                                    |45.61 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |17466109                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |58.59 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |2375329847                                  |39.06 %                                     |970047862                                   |31.90 %                                     |1405281985                                  |46.21 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |664328677                                   |10.92 %                                     |49656917                                    |1.63 %                                      |614671760                                   |20.21 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |649604078                                   |10.68 %                                     |606025856                                   |19.93 %                                     |43578222                                    |1.43 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |2325329096                                  |38.23 %                                     |1384714975                                  |45.54 %                                     |940614121                                   |30.93 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |67229498                                    |1.11 %                                      |30464988                                    |1.00 %                                      |36764510                                    |1.21 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9949997679503766                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |21165652                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612242.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |29812849                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |29812849                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612242.41_isize.png

Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs Lane 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612192.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |47360034                                    |100.00 %                                    |23680017                                    |100.00 %                                    |23680017                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |44505119                                    |93.97 %                                     |22355590                                    |94.41 %                                     |22149529                                    |93.54 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |1805                                        |0.00 %                                      |907                                         |0.00 %                                      |898                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |2853110                                     |6.02 %                                      |1323520                                     |5.59 %                                      |1529590                                     |6.46 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |22715763                                    |47.96 %                                     |11404491                                    |48.16 %                                     |11311272                                    |47.77 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |21791161                                    |46.01 %                                     |10952006                                    |46.25 %                                     |10839155                                    |45.77 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |13972703                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |59.01 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |1889730815                                  |39.12 %                                     |772238388                                   |31.97 %                                     |1117492427                                  |46.27 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |523675478                                   |10.84 %                                     |37343943                                    |1.55 %                                      |486331535                                   |20.13 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |511086871                                   |10.58 %                                     |478845125                                   |19.82 %                                     |32241746                                    |1.33 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |1851382422                                  |38.33 %                                     |1102390132                                  |45.64 %                                     |748992290                                   |31.01 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |54847882                                    |1.14 %                                      |24544146                                    |1.02 %                                      |30303736                                    |1.25 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9948873575049372                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |16874690                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612192.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |23680017                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |23680017                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612192.41_isize.png

Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs Lane 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612348.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |69239916                                    |100.00 %                                    |34619958                                    |100.00 %                                    |34619958                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |64721050                                    |93.47 %                                     |32465836                                    |93.78 %                                     |32255214                                    |93.17 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |2718                                        |0.00 %                                      |1370                                        |0.00 %                                      |1348                                        |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |4516148                                     |6.52 %                                      |2152752                                     |6.22 %                                      |2363396                                     |6.83 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |33043179                                    |47.72 %                                     |16564480                                    |47.85 %                                     |16478699                                    |47.60 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |31680589                                    |45.75 %                                     |15902726                                    |45.94 %                                     |15777863                                    |45.57 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |20477901                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |59.15 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |2749186908                                  |38.93 %                                     |1126594128                                  |31.90 %                                     |1622592780                                  |45.95 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |778588480                                   |11.02 %                                     |61958355                                    |1.75 %                                      |716630125                                   |20.29 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |755111300                                   |10.69 %                                     |705753789                                   |19.99 %                                     |49357511                                    |1.40 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |2695058510                                  |38.16 %                                     |1598993274                                  |45.28 %                                     |1096065236                                  |31.04 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |84526234                                    |1.20 %                                      |37936170                                    |1.07 %                                      |46590064                                    |1.32 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9716185986167098                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |24650694                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612348.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |34619958                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |34619958                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612348.41_isize.png

Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs Lane 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612178.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |166971262                                   |100.00 %                                    |83485631                                    |100.00 %                                    |83485631                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |163752735                                   |98.07 %                                     |82366365                                    |98.66 %                                     |81386370                                    |97.49 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |382793                                      |0.23 %                                      |192873                                      |0.23 %                                      |189920                                      |0.23 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |2835734                                     |1.70 %                                      |926393                                      |1.11 %                                      |1909341                                     |2.29 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |83798683                                    |50.19 %                                     |42135557                                    |50.47 %                                     |41663126                                    |49.90 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |80336845                                    |48.11 %                                     |40423681                                    |48.42 %                                     |39913164                                    |47.81 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |62476946                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |74.84 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |6538098603                                  |38.39 %                                     |2573801940                                  |30.22 %                                     |3964296663                                  |46.55 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1913243592                                  |11.23 %                                     |80130175                                    |0.94 %                                      |1833113417                                  |21.53 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1934295698                                  |11.36 %                                     |1871927426                                  |21.98 %                                     |62368272                                    |0.73 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |6469906520                                  |37.99 %                                     |3905765517                                  |45.87 %                                     |2564141003                                  |30.11 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |175524311                                   |1.03 %                                      |83909304                                    |0.99 %                                      |91615007                                    |1.08 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9945518100791201                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |73848353                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612178.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |83485631                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |83485631                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612178.41_isize.png

Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs Lane 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612412.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |51935096                                    |100.00 %                                    |25967548                                    |100.00 %                                    |25967548                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |48844988                                    |94.05 %                                     |24628806                                    |94.84 %                                     |24216182                                    |93.26 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |1994                                        |0.00 %                                      |1004                                        |0.00 %                                      |990                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |3088114                                     |5.95 %                                      |1337738                                     |5.15 %                                      |1750376                                     |6.74 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |24940452                                    |48.02 %                                     |12566494                                    |48.39 %                                     |12373958                                    |47.65 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |23906530                                    |46.03 %                                     |12063316                                    |46.46 %                                     |11843214                                    |45.61 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |15334138                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |59.05 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |2073117294                                  |39.13 %                                     |846430267                                   |31.96 %                                     |1226687027                                  |46.31 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |574441072                                   |10.84 %                                     |40447995                                    |1.53 %                                      |533993077                                   |20.16 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |561296369                                   |10.60 %                                     |526238654                                   |19.87 %                                     |35057715                                    |1.32 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |2030491600                                  |38.33 %                                     |1209169227                                  |45.65 %                                     |821322373                                   |31.01 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |58033457                                    |1.10 %                                      |26403753                                    |1.00 %                                      |31629704                                    |1.19 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9934889998674983                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |18506298                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612412.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |25967548                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |25967548                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612412.41_isize.png

Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs Lane 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612165.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |55301932                                    |100.00 %                                    |27650966                                    |100.00 %                                    |27650966                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |52013082                                    |94.05 %                                     |26138692                                    |94.53 %                                     |25874390                                    |93.57 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |1953                                        |0.00 %                                      |984                                         |0.00 %                                      |969                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |3286897                                     |5.94 %                                      |1511290                                     |5.47 %                                      |1775607                                     |6.42 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |26557639                                    |48.02 %                                     |13338270                                    |48.24 %                                     |13219369                                    |47.81 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |25457396                                    |46.03 %                                     |12801406                                    |46.30 %                                     |12655990                                    |45.77 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |16400208                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |59.31 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |2202581326                                  |39.05 %                                     |899605483                                   |31.90 %                                     |1302975843                                  |46.20 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |614402490                                   |10.89 %                                     |45086577                                    |1.60 %                                      |569315913                                   |20.19 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |604336576                                   |10.71 %                                     |564429451                                   |20.01 %                                     |39907125                                    |1.41 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |2155791054                                  |38.22 %                                     |1282984897                                  |45.49 %                                     |872806157                                   |30.95 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |63685618                                    |1.13 %                                      |28292124                                    |1.00 %                                      |35393494                                    |1.25 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9946516953090945                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |19812932                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612165.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |27650966                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |27650966                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612165.41_isize.png

Sample K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs Lane 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612252.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |163312804                                   |100.00 %                                    |81656402                                    |100.00 %                                    |81656402                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |160058054                                   |98.01 %                                     |80560854                                    |98.66 %                                     |79497200                                    |97.36 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |378749                                      |0.23 %                                      |190964                                      |0.23 %                                      |187785                                      |0.23 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |2876001                                     |1.76 %                                      |904584                                      |1.11 %                                      |1971417                                     |2.41 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |81929343                                    |50.17 %                                     |41220401                                    |50.48 %                                     |40708942                                    |49.85 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |78507460                                    |48.07 %                                     |39531417                                    |48.41 %                                     |38976043                                    |47.73 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |60947123                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |74.64 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |6391994936                                  |38.37 %                                     |2516730355                                  |30.22 %                                     |3875264581                                  |46.53 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1874717216                                  |11.25 %                                     |78469582                                    |0.94 %                                      |1796247634                                  |21.57 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1900552456                                  |11.41 %                                     |1837789907                                  |22.07 %                                     |62762549                                    |0.75 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |6318034377                                  |37.93 %                                     |3814045276                                  |45.79 %                                     |2503989101                                  |30.06 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |172607023                                   |1.04 %                                      |81917884                                    |0.98 %                                      |90689139                                    |1.09 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9945484202309798                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |72149477                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612252.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |81656402                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |81656402                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612252.41_isize.png

