/EXTERNAL DEEP/mapping_coverage/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs
BACK
SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1472490885 |
100% |
142718688361 |
100% |
| Mapped |
1449189887 |
98.42 % |
140389954663 |
98.37 % |
| Passed |
924912423 |
62.81 % |
88893788341 |
62.29 % |
| NotPassed |
524277464 |
35.60 % |
51496166322 |
36.08 % |
| |
|
|
|
|
| LowMAPQ |
250320568 |
17.00 % |
24372659183 |
17.08 % |
| MateUnmapped |
23300998 |
1.58 % |
2311451556 |
1.62 % |
| Duplicate |
108496189 |
7.37 % |
10502614944 |
7.36 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
32186 |
0.00 % |
3196496 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
165428521 |
11.23 % |
16617695699 |
11.64 % |
| Unmapped |
23300998 |
1.58 % |
2328733698 |
1.63 % |
Base Level Counts
| Bases |
# |
% |
| Total |
91871406978 |
100% |
| Passed |
83248891812 |
90.61 % |
| Trimmed |
4419875969 |
4.81 % |
| Clipped |
232935220 |
0.25 % |
| Overlapping |
2744683417 |
2.99 % |
| LowQuality |
1225020560 |
1.33 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |