/EXTERNAL DEEP/K009022_K009023_K009024_3_lane_gembs/41_Hf14.Bisulfite-Seq.DNA_methylation.EGAX00001612152.41

BACK

SAMPLE K009022_K009023_K009024_3_lane_gembs LANE 41_Hf14.Bisulfite-Seq.DNA_methylation.EGAX00001612152.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 296770866 100.00 % 148385433 100.00 % 148385433 100.00 %
General Reads 284357815 95.82 % 144586722 97.44 % 139771093 94.19 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 583146 0.20 % 296018 0.20 % 287128 0.19 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11829905 3.99 % 3502693 2.36 % 8327212 5.61 %
Bisulfite_reads C2T 146213897 49.27 % 74314046 50.08 % 71899851 48.45 %
Bisulfite_reads G2A 138727064 46.75 % 70568694 47.56 % 68158370 45.93 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 113798152
Average Unique 76.69 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 11600990842 38.70 % 4898721446 32.69 % 6702269396 44.72 %
Base Counts Overall C 3226227028 10.76 % 156374688 1.04 % 3069852340 20.48 %
Base Counts Overall G 3202593784 10.68 % 3061210416 20.43 % 141383368 0.94 %
Base Counts Overall T 11472622892 38.28 % 6715593195 44.81 % 4757029697 31.74 %
Base Counts Overall N 471422920 1.57 % 155028988 1.03 % 316393932 2.11 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9946570494559475
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 133471162



Mapping Quality

Mapping Quality Histogram
41_Hf14.Bisulfite-Seq.DNA_methylation.EGAX00001612152.41.mapq.png



Read Length

Read Length Reads
100 148385433
100 148385433



Insert Size Plot

Insert Size Histogram
41_Hf14.Bisulfite-Seq.DNA_methylation.EGAX00001612152.41.isize.png