/EXTERNAL DEEP/K009022_K009023_K009024_3_lane_gembs/41_Hf14.Bisulfite-Seq.DNA_methylation.EGAX00001612208.41

BACK

SAMPLE K009022_K009023_K009024_3_lane_gembs LANE 41_Hf14.Bisulfite-Seq.DNA_methylation.EGAX00001612208.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 411945408 100.00 % 205972704 100.00 % 205972704 100.00 %
General Reads 394873519 95.86 % 198881310 96.56 % 195992209 95.15 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 443456 0.11 % 224126 0.11 % 219330 0.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 16628433 4.04 % 6867268 3.33 % 9761165 4.74 %
Bisulfite_reads C2T 199779745 48.50 % 100587598 48.84 % 99192147 48.16 %
Bisulfite_reads G2A 195537230 47.47 % 98517838 47.83 % 97019392 47.10 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 125941229
Average Unique 61.14 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14753867713 35.11 % 5861324956 27.90 % 8892542757 42.33 %
Base Counts Overall C 6169851199 14.68 % 836802330 3.98 % 5333048869 25.38 %
Base Counts Overall G 6471710425 15.40 % 5482692582 26.10 % 989017843 4.71 %
Base Counts Overall T 14086011109 33.52 % 8620155964 41.03 % 5465855145 26.02 %
Base Counts Overall N 536991170 1.28 % 208239976 0.99 % 328751194 1.56 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9820838203832885
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 148423005



Mapping Quality

Mapping Quality Histogram
41_Hf14.Bisulfite-Seq.DNA_methylation.EGAX00001612208.41.mapq.png



Read Length

Read Length Reads
101 205972704
101 205972704



Insert Size Plot

Insert Size Histogram
41_Hf14.Bisulfite-Seq.DNA_methylation.EGAX00001612208.41.isize.png