/EXTERNAL DEEP/K009022_K009023_K009024_3_lane_gembs/41_Hf14.Bisulfite-Seq.DNA_methylation.EGAX00001612346.41

BACK

SAMPLE K009022_K009023_K009024_3_lane_gembs LANE 41_Hf14.Bisulfite-Seq.DNA_methylation.EGAX00001612346.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 284541884 100.00 % 142270942 100.00 % 142270942 100.00 %
General Reads 272242050 95.68 % 138440033 97.31 % 133802017 94.05 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 559640 0.20 % 284201 0.20 % 275439 0.19 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11740194 4.13 % 3546708 2.49 % 8193486 5.76 %
Bisulfite_reads C2T 139960879 49.19 % 71140191 50.00 % 68820688 48.37 %
Bisulfite_reads G2A 132840811 46.69 % 67584043 47.50 % 65256768 45.87 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 108314868
Average Unique 76.13 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 11108547636 38.65 % 4701229596 32.72 % 6407318040 44.59 %
Base Counts Overall C 3084121242 10.73 % 149041845 1.04 % 2935079397 20.43 %
Base Counts Overall G 3055127813 10.63 % 2924523328 20.35 % 130604485 0.91 %
Base Counts Overall T 10991096868 38.24 % 6442982536 44.84 % 4548114332 31.65 %
Base Counts Overall N 499836725 1.74 % 151587837 1.05 % 348248888 2.42 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9945383237878225
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 127474174



Mapping Quality

Mapping Quality Histogram
41_Hf14.Bisulfite-Seq.DNA_methylation.EGAX00001612346.41.mapq.png



Read Length

Read Length Reads
100 142270942
100 142270942



Insert Size Plot

Insert Size Histogram
41_Hf14.Bisulfite-Seq.DNA_methylation.EGAX00001612346.41.isize.png