/EXTERNAL DEEP/K009022_K009023_K009024_3_lane_gembs

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SAMPLE K009022_K009023_K009024_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 993258158 100.00 % 496629079 100.00 % 496629079 100.00 %
General Reads 951473384 95.79 % 481908065 97.04 % 469565319 94.55 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1586242 0.16 % 804345 0.16 % 781897 0.16 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 40198532 4.05 % 13916669 2.80 % 26281863 5.29 %
Bisulfite_reads C2T 485954521 48.93 % 246041835 49.54 % 239912686 48.31 %
Bisulfite_reads G2A 467105105 47.03 % 236670575 47.66 % 230434530 46.40 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 348054249
Average Unique 70.08 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 37463406191 37.19 % 15461275998 30.70 % 22002130193 43.68 %
Base Counts Overall C 12480199469 12.39 % 1142218863 2.27 % 11337980606 22.51 %
Base Counts Overall G 12729432022 12.64 % 11468426326 22.77 % 1261005696 2.50 %
Base Counts Overall T 36549730869 36.28 % 21778731695 43.24 % 14770999174 29.33 %
Base Counts Overall N 1508250815 1.50 % 514856801 1.02 % 993394014 1.97 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9911793616504827
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 409368341



Mapping Quality

Mapping Quality Histogram
K009022_K009023_K009024_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K009022_K009023_K009024_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
41_Hf14.Bisulfite-Seq.DNA_methylation.EGAX00001612152.41
41_Hf14.Bisulfite-Seq.DNA_methylation.EGAX00001612346.41
41_Hf14.Bisulfite-Seq.DNA_methylation.EGAX00001612208.41