/EXTERNAL DEEP/mapping_coverage/K009022_K009023_K009024_3_lane_gembs
BACK
SAMPLE K009022_K009023_K009024_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
877923920 |
100% |
85292620762 |
100% |
| Mapped |
858445322 |
97.78 % |
83338750275 |
97.71 % |
| Passed |
551984763 |
62.87 % |
52490287840 |
61.54 % |
| NotPassed |
306460559 |
34.91 % |
30848462435 |
36.17 % |
| |
|
|
|
|
| LowMAPQ |
200097164 |
22.79 % |
20132653654 |
23.60 % |
| MateUnmapped |
19478598 |
2.22 % |
1953870487 |
2.29 % |
| Duplicate |
74547613 |
8.49 % |
7522794355 |
8.82 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
23328 |
0.00 % |
2350810 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
31792454 |
3.62 % |
3190663616 |
3.74 % |
| Unmapped |
19478598 |
2.22 % |
1953870487 |
2.29 % |
Base Level Counts
| Bases |
# |
% |
| Total |
55286132754 |
100% |
| Passed |
48920867303 |
88.49 % |
| Trimmed |
2621910935 |
4.74 % |
| Clipped |
300241410 |
0.54 % |
| Overlapping |
2495603504 |
4.51 % |
| LowQuality |
947509602 |
1.71 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |