/EXTERNAL DEEP/methylation/K009022_K009023_K009024_3_lane_gembs
BACK
SAMPLE K009022_K009023_K009024_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
25422074 |
12580087 |
49.48 % |
| NonRefCpG |
323541 |
96010 |
29.67 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7886022 |
16.32 % |
3420425 |
10.65 % |
156315 |
26.63 % |
45080 |
15.01 % |
| Intermediate (0.3-0.7) |
14032114 |
29.04 % |
8116331 |
25.27 % |
179827 |
30.64 % |
84999 |
28.31 % |
| Methylated (0.7-1) |
26403395 |
54.64 % |
20575934 |
64.07 % |
250826 |
42.73 % |
170167 |
56.68 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.730 |
|
0.800 |
|
0.620 |
|
0.750 |
|