/EXTERNAL DEEP/K009025_K009026_K009027_3_lane_gembs/52_Hf3b.Bisulfite-Seq.DNA_methylation.EGAX00001612202.52

BACK

SAMPLE K009025_K009026_K009027_3_lane_gembs LANE 52_Hf3b.Bisulfite-Seq.DNA_methylation.EGAX00001612202.52

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 377615984 100.00 % 188807992 100.00 % 188807992 100.00 %
General Reads 372620392 98.68 % 187304402 99.20 % 185315990 98.15 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 409068 0.11 % 205782 0.11 % 203286 0.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4586524 1.21 % 1297808 0.69 % 3288716 1.74 %
Bisulfite_reads C2T 189499981 50.18 % 95239957 50.44 % 94260024 49.92 %
Bisulfite_reads G2A 183529479 48.60 % 92270227 48.87 % 91259252 48.33 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 148639076
Average Unique 78.72 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15404828625 40.00 % 6729735304 34.94 % 8675093321 45.05 %
Base Counts Overall C 3721966756 9.66 % 135164551 0.70 % 3586802205 18.62 %
Base Counts Overall G 3773027335 9.80 % 3651908642 18.96 % 121118693 0.63 %
Base Counts Overall T 15232549669 39.55 % 8552339748 44.41 % 6680209921 34.69 %
Base Counts Overall N 384457983 1.00 % 189266939 0.98 % 195191044 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9944941873468331
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 165453874



Mapping Quality

Mapping Quality Histogram
52_Hf3b.Bisulfite-Seq.DNA_methylation.EGAX00001612202.52.mapq.png



Read Length

Read Length Reads
101 188807992
101 188807992



Insert Size Plot

Insert Size Histogram
52_Hf3b.Bisulfite-Seq.DNA_methylation.EGAX00001612202.52.isize.png