/EXTERNAL DEEP/K009025_K009026_K009027_3_lane_gembs/52_Hf3b.Bisulfite-Seq.DNA_methylation.EGAX00001612254.52

BACK

SAMPLE K009025_K009026_K009027_3_lane_gembs LANE 52_Hf3b.Bisulfite-Seq.DNA_methylation.EGAX00001612254.52

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 418520858 100.00 % 209260429 100.00 % 209260429 100.00 %
General Reads 405831997 96.97 % 203867006 97.42 % 201964991 96.51 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3991087 0.95 % 2011003 0.96 % 1980084 0.95 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8697774 2.08 % 3382420 1.62 % 5315354 2.54 %
Bisulfite_reads C2T 209822565 50.13 % 105389785 50.36 % 104432780 49.91 %
Bisulfite_reads G2A 200000519 47.79 % 100488224 48.02 % 99512295 47.55 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 142156972
Average Unique 67.93 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15564533677 36.46 % 6122925353 28.69 % 9441608324 44.23 %
Base Counts Overall C 5723196238 13.41 % 624763980 2.93 % 5098432258 23.89 %
Base Counts Overall G 5915465455 13.86 % 5165118786 24.20 % 750346669 3.52 %
Base Counts Overall T 15059570210 35.28 % 9220756245 43.20 % 5838813965 27.36 %
Base Counts Overall N 426361936 1.00 % 210999394 0.99 % 215362542 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9796301629749724
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 164074137



Mapping Quality

Mapping Quality Histogram
52_Hf3b.Bisulfite-Seq.DNA_methylation.EGAX00001612254.52.mapq.png



Read Length

Read Length Reads
101 209260429
101 209260429



Insert Size Plot

Insert Size Histogram
52_Hf3b.Bisulfite-Seq.DNA_methylation.EGAX00001612254.52.isize.png