/EXTERNAL DEEP/methylation/K009025_K009026_K009027_3_lane_gembs
BACK
SAMPLE K009025_K009026_K009027_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26296177 |
16003801 |
60.86 % |
| NonRefCpG |
331638 |
133800 |
40.35 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5793525 |
11.61 % |
2298747 |
6.30 % |
131223 |
21.78 % |
35859 |
10.07 % |
| Intermediate (0.3-0.7) |
13873910 |
27.81 % |
8737143 |
23.93 % |
173102 |
28.73 % |
92449 |
25.97 % |
| Methylated (0.7-1) |
30219138 |
60.58 % |
25475332 |
69.77 % |
298248 |
49.50 % |
227640 |
63.95 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.770 |
|
0.820 |
|
0.690 |
|
0.790 |
|