/EXTERNAL DEEP/K009046_K009047_K009048_3_lane_gembs/52_Hm1a.Bisulfite-Seq.DNA_methylation.EGAX00001612169.52

BACK

SAMPLE K009046_K009047_K009048_3_lane_gembs LANE 52_Hm1a.Bisulfite-Seq.DNA_methylation.EGAX00001612169.52

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 319386546 100.00 % 159693273 100.00 % 159693273 100.00 %
General Reads 313651775 98.20 % 157942382 98.90 % 155709393 97.51 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 821241 0.26 % 414044 0.26 % 407197 0.25 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4913530 1.54 % 1336847 0.84 % 3576683 2.24 %
Bisulfite_reads C2T 161124373 50.45 % 81120534 50.80 % 80003839 50.10 %
Bisulfite_reads G2A 153348643 48.01 % 77235892 48.37 % 76112751 47.66 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 130363367
Average Unique 81.63 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12752796954 39.15 % 5677114213 34.85 % 7075682741 43.44 %
Base Counts Overall C 3273607881 10.05 % 125025186 0.77 % 3148582695 19.33 %
Base Counts Overall G 3324874095 10.21 % 3210896814 19.71 % 113977281 0.70 %
Base Counts Overall T 12746680976 39.13 % 7115301674 43.68 % 5631379302 34.57 %
Base Counts Overall N 479467786 1.47 % 160375959 0.98 % 319091827 1.96 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9955820342701762
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 147909106



Mapping Quality

Mapping Quality Histogram
52_Hm1a.Bisulfite-Seq.DNA_methylation.EGAX00001612169.52.mapq.png



Read Length

Read Length Reads
101 159693273
101 159693273



Insert Size Plot

Insert Size Histogram
52_Hm1a.Bisulfite-Seq.DNA_methylation.EGAX00001612169.52.isize.png