/EXTERNAL DEEP/K009046_K009047_K009048_3_lane_gembs/52_Hm1a.Bisulfite-Seq.DNA_methylation.EGAX00001612332.52

BACK

SAMPLE K009046_K009047_K009048_3_lane_gembs LANE 52_Hm1a.Bisulfite-Seq.DNA_methylation.EGAX00001612332.52

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 420141438 100.00 % 210070719 100.00 % 210070719 100.00 %
General Reads 410496441 97.70 % 207162645 98.62 % 203333796 96.79 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 6 0.00 % 3 0.00 % 3 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 9644991 2.30 % 2908071 1.38 % 6736920 3.21 %
Bisulfite_reads C2T 210650505 50.14 % 106281279 50.59 % 104369226 49.68 %
Bisulfite_reads G2A 199845942 47.57 % 100881369 48.02 % 98964573 47.11 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 149305435
Average Unique 71.07 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15908618025 37.12 % 6185337958 28.87 % 9723280067 45.38 %
Base Counts Overall C 5326288975 12.43 % 520795211 2.43 % 4805493764 22.43 %
Base Counts Overall G 5553620952 12.96 % 4968299864 23.19 % 585321088 2.73 %
Base Counts Overall T 15452622367 36.06 % 9541773849 44.53 % 5910848518 27.59 %
Base Counts Overall N 613276357 1.43 % 211006456 0.98 % 402269901 1.88 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 173083723



Mapping Quality

Mapping Quality Histogram
52_Hm1a.Bisulfite-Seq.DNA_methylation.EGAX00001612332.52.mapq.png



Read Length

Read Length Reads
101 210070719
101 210070719



Insert Size Plot

Insert Size Histogram
52_Hm1a.Bisulfite-Seq.DNA_methylation.EGAX00001612332.52.isize.png