/EXTERNAL DEEP/K009046_K009047_K009048_3_lane_gembs/52_Hm1a.Bisulfite-Seq.DNA_methylation.EGAX00001612361.52

BACK

SAMPLE K009046_K009047_K009048_3_lane_gembs LANE 52_Hm1a.Bisulfite-Seq.DNA_methylation.EGAX00001612361.52

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 299512266 100.00 % 149756133 100.00 % 149756133 100.00 %
General Reads 293182746 97.89 % 148070064 98.87 % 145112682 96.90 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 765684 0.26 % 387288 0.26 % 378396 0.25 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 5563836 1.86 % 1298781 0.87 % 4265055 2.85 %
Bisulfite_reads C2T 150566335 50.27 % 76023033 50.76 % 74543302 49.78 %
Bisulfite_reads G2A 143382095 47.87 % 72434319 48.37 % 70947776 47.38 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 121501706
Average Unique 81.13 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 11929323380 39.05 % 5331797867 34.91 % 6597525513 43.19 %
Base Counts Overall C 3046476206 9.97 % 116476766 0.76 % 2929999440 19.18 %
Base Counts Overall G 3109200585 10.18 % 3002849473 19.66 % 106351112 0.70 %
Base Counts Overall T 11935623784 39.07 % 6674050108 43.69 % 5261573676 34.45 %
Base Counts Overall N 529627177 1.73 % 149951352 0.98 % 379675825 2.49 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9958271048514947
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 138009438



Mapping Quality

Mapping Quality Histogram
52_Hm1a.Bisulfite-Seq.DNA_methylation.EGAX00001612361.52.mapq.png



Read Length

Read Length Reads
101 149756133
101 149756133



Insert Size Plot

Insert Size Histogram
52_Hm1a.Bisulfite-Seq.DNA_methylation.EGAX00001612361.52.isize.png