/EXTERNAL DEEP/methylation/K009046_K009047_K009048_3_lane_gembs
BACK
SAMPLE K009046_K009047_K009048_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26436721 |
17676376 |
66.86 % |
| NonRefCpG |
325483 |
148322 |
45.57 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5766033 |
11.33 % |
2635319 |
6.64 % |
115719 |
19.48 % |
32533 |
8.66 % |
| Intermediate (0.3-0.7) |
13400018 |
26.34 % |
9217226 |
23.23 % |
165715 |
27.90 % |
94293 |
25.10 % |
| Methylated (0.7-1) |
31716297 |
62.33 % |
27826328 |
70.13 % |
312528 |
52.62 % |
248895 |
66.24 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.780 |
|
0.820 |
|
0.720 |
|
0.800 |
|