/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612168.41
BACK
SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612168.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 92954732 | 100.00 % | 46477366 | 100.00 % | 46477366 | 100.00 % |
| General Reads | 86924405 | 93.51 % | 44102787 | 94.89 % | 42821618 | 92.13 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 299 | 0.00 % | 150 | 0.00 % | 149 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6030028 | 6.49 % | 2374429 | 5.11 % | 3655599 | 7.87 % |
| Bisulfite_reads C2T | 43894426 | 47.22 % | 22228827 | 47.83 % | 21665599 | 46.62 % |
| Bisulfite_reads G2A | 43030278 | 46.29 % | 21874110 | 47.06 % | 21156168 | 45.52 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5667136 |
| Average Unique | 12.19 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3817668276 | 40.26 % | 1532454471 | 32.33 % | 2285213805 | 48.20 % |
| Base Counts Overall C | 937682810 | 9.89 % | 60266916 | 1.27 % | 877415894 | 18.51 % |
| Base Counts Overall G | 919029486 | 9.69 % | 878074657 | 18.52 % | 40954829 | 0.86 % |
| Base Counts Overall T | 3699969892 | 39.02 % | 2222273270 | 46.88 % | 1477696622 | 31.17 % |
| Base Counts Overall N | 107032200 | 1.13 % | 47622018 | 1.00 % | 59410182 | 1.25 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9929571580097333 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 9950242 |
Mapping Quality
| Mapping Quality Histogram |
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Read Length
| Read Length | Reads |
| 101 | 46477366 |
| 101 | 46477366 |
Insert Size Plot
| Insert Size Histogram |
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