/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612171.41
BACK
SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612171.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 86503022 | 100.00 % | 43251511 | 100.00 % | 43251511 | 100.00 % |
| General Reads | 80917039 | 93.54 % | 40982413 | 94.75 % | 39934626 | 92.33 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 249 | 0.00 % | 124 | 0.00 % | 125 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5585734 | 6.46 % | 2268974 | 5.25 % | 3316760 | 7.67 % |
| Bisulfite_reads C2T | 40881793 | 47.26 % | 20669288 | 47.79 % | 20212505 | 46.73 % |
| Bisulfite_reads G2A | 40035495 | 46.28 % | 20313249 | 46.97 % | 19722246 | 45.60 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5309495 |
| Average Unique | 12.28 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3555034249 | 40.29 % | 1439868720 | 32.64 % | 2115165529 | 47.94 % |
| Base Counts Overall C | 874969074 | 9.92 % | 65302229 | 1.48 % | 809666845 | 18.35 % |
| Base Counts Overall G | 873192971 | 9.90 % | 817765091 | 18.54 % | 55427880 | 1.26 % |
| Base Counts Overall T | 3422718385 | 38.79 % | 2044848299 | 46.35 % | 1377870086 | 31.23 % |
| Base Counts Overall N | 97393565 | 1.10 % | 43869783 | 0.99 % | 53523782 | 1.21 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9964715037029087 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 9396673 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 43251511 |
| 101 | 43251511 |
Insert Size Plot
| Insert Size Histogram |
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