/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612177.41
BACK
SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612177.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 158774804 | 100.00 % | 79387402 | 100.00 % | 79387402 | 100.00 % |
| General Reads | 156186792 | 98.37 % | 78530786 | 98.92 % | 77656006 | 97.82 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 285877 | 0.18 % | 144045 | 0.18 % | 141832 | 0.18 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2302135 | 1.45 % | 712571 | 0.90 % | 1589564 | 2.00 % |
| Bisulfite_reads C2T | 80938603 | 50.98 % | 40683911 | 51.25 % | 40254692 | 50.71 % |
| Bisulfite_reads G2A | 75534066 | 47.57 % | 37990920 | 47.86 % | 37543146 | 47.29 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 60023555 |
| Average Unique | 75.61 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 6162300652 | 38.05 % | 2413581832 | 29.81 % | 3748718820 | 46.29 % |
| Base Counts Overall C | 1877284285 | 11.59 % | 76960787 | 0.95 % | 1800323498 | 22.23 % |
| Base Counts Overall G | 1907882145 | 11.78 % | 1848650693 | 22.83 % | 59231452 | 0.73 % |
| Base Counts Overall T | 6080592543 | 37.55 % | 3678527887 | 45.43 % | 2402064656 | 29.66 % |
| Base Counts Overall N | 166970383 | 1.03 % | 79793805 | 0.99 % | 87176578 | 1.08 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9947636114741983 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 72218741 |
Mapping Quality
| Mapping Quality Histogram |
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Read Length
| Read Length | Reads |
| 101 | 79387402 |
| 101 | 79387402 |
Insert Size Plot
| Insert Size Histogram |
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