/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612187.41

BACK

SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612187.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 91356828 100.00 % 45678414 100.00 % 45678414 100.00 %
General Reads 88545616 96.92 % 44341331 97.07 % 44204285 96.77 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3 0.00 % 1 0.00 % 2 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 2811209 3.08 % 1337082 2.93 % 1474127 3.23 %
Bisulfite_reads C2T 45100400 49.37 % 22583149 49.44 % 22517251 49.30 %
Bisulfite_reads G2A 43445219 47.56 % 21758183 47.63 % 21687036 47.48 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 33750249
Average Unique 73.89 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 3166725476 37.05 % 1155994342 28.31 % 2010731134 45.05 %
Base Counts Overall C 1174754278 13.74 % 104687245 2.56 % 1070067033 23.97 %
Base Counts Overall G 1155769255 13.52 % 1037657035 25.41 % 118112220 2.65 %
Base Counts Overall T 2958284264 34.61 % 1739599689 42.60 % 1218684575 27.30 %
Base Counts Overall N 91706192 1.07 % 45683263 1.12 % 46022929 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 40016224



Mapping Quality

Mapping Quality Histogram
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612187.41.mapq.png



Read Length

Read Length Reads
70 137322
86 209758
73 161365
24 122539
20 115322
45 115361
97 11442241
89 1087128
52 117466
93 654944
77 144379
59 140285
79 131092
82 74776
31 111450
74 160829
80 125940
96 2840545
84 102345
39 112585
43 124618
63 119720
91 1213840
46 113961
40 115383
58 132942
30 108888
49 116468
38 114438
60 135765
57 125022
75 163693
53 117051
69 139648
90 2499689
88 583511
27 112477
36 113312
71 142480
32 110438
33 113456
81 106515
47 113247
54 119965
76 157422
41 116311
78 135713
51 118656
29 110458
44 121908
95 1295998
25 123545
85 139045
22 110748
72 135054
21 114740
56 121185
98 14290375
23 110309
65 124703
48 116101
61 127740
42 119929
35 111038
87 302050
92 350971
28 112260
34 109927
83 72514
94 856358
26 114657
55 118166
37 112522
67 136074
68 140340
50 119146
64 122008
66 125261
62 120983
70 58281
86 50806
73 33858
24 9496
20 9086
45 20968
97 3240361
89 100104
52 20473
93 232410
77 32273
59 23921
79 34229
82 37126
31 13238
74 32477
80 34970
96 3022868
84 42059
39 17278
43 18484
63 40507
91 145974
46 22500
40 18506
58 23770
30 12334
49 20030
38 15451
60 24340
57 23083
75 31353
53 20259
69 68295
90 158649
99 26536336
88 75137
27 11101
36 14624
71 47004
32 14270
33 14142
81 36325
47 22200
54 21060
76 31809
41 19938
78 33502
51 19664
29 11699
44 19683
95 1102590
25 10098
85 45565
22 9093
72 38634
21 8874
56 22649
98 8702643
23 8894
65 41948
48 21540
61 27027
42 18123
35 15293
87 58475
92 139503
28 12075
34 14774
83 39251
94 398993
26 10987
55 21827
37 14861
67 51442
68 66132
50 19638
64 40847
66 44959
62 33368



Insert Size Plot

Insert Size Histogram
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612187.41.isize.png