/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612388.41
BACK
SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612388.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 98901854 | 100.00 % | 49450927 | 100.00 % | 49450927 | 100.00 % |
| General Reads | 91574691 | 92.59 % | 46203700 | 93.43 % | 45370991 | 91.75 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 340 | 0.00 % | 171 | 0.00 % | 169 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7326823 | 7.41 % | 3247056 | 6.57 % | 4079767 | 8.25 % |
| Bisulfite_reads C2T | 46260464 | 46.77 % | 23296346 | 47.11 % | 22964118 | 46.44 % |
| Bisulfite_reads G2A | 45314567 | 45.82 % | 22907525 | 46.32 % | 22407042 | 45.31 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5937121 |
| Average Unique | 12.01 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 4063554732 | 40.28 % | 1630622802 | 32.33 % | 2432931930 | 48.23 % |
| Base Counts Overall C | 999510836 | 9.91 % | 65927417 | 1.31 % | 933583419 | 18.51 % |
| Base Counts Overall G | 974005879 | 9.66 % | 929161459 | 18.42 % | 44844420 | 0.89 % |
| Base Counts Overall T | 3939556323 | 39.05 % | 2367685115 | 46.94 % | 1571871208 | 31.16 % |
| Base Counts Overall N | 111361338 | 1.10 % | 50597761 | 1.00 % | 60763577 | 1.20 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9942109391719347 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 10564788 |
Mapping Quality
| Mapping Quality Histogram |
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Read Length
| Read Length | Reads |
| 101 | 49450927 |
| 101 | 49450927 |
Insert Size Plot
| Insert Size Histogram |
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