/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612390.41
BACK
SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612390.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 101158616 | 100.00 % | 50579308 | 100.00 % | 50579308 | 100.00 % |
| General Reads | 93755515 | 92.68 % | 47553410 | 94.02 % | 46202105 | 91.35 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 511 | 0.00 % | 267 | 0.00 % | 244 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7402590 | 7.32 % | 3025631 | 5.98 % | 4376959 | 8.65 % |
| Bisulfite_reads C2T | 47333815 | 46.79 % | 23965018 | 47.38 % | 23368797 | 46.20 % |
| Bisulfite_reads G2A | 46422211 | 45.89 % | 23588659 | 46.64 % | 22833552 | 45.14 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 6218569 |
| Average Unique | 12.29 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 4128279333 | 40.01 % | 1660306174 | 32.18 % | 2467973159 | 47.84 % |
| Base Counts Overall C | 1048849522 | 10.17 % | 80094907 | 1.55 % | 968754615 | 18.78 % |
| Base Counts Overall G | 1012211072 | 9.81 % | 962885707 | 18.66 % | 49325365 | 0.96 % |
| Base Counts Overall T | 4004464701 | 38.81 % | 2400923507 | 46.54 % | 1603541194 | 31.08 % |
| Base Counts Overall N | 124374204 | 1.21 % | 54879121 | 1.06 % | 69495083 | 1.35 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.6889502436431866 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 10687219 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 50579308 |
| 101 | 50579308 |
Insert Size Plot
| Insert Size Histogram |
 |