/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612405.41
BACK
SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612405.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 95538942 | 100.00 % | 47769471 | 100.00 % | 47769471 | 100.00 % |
| General Reads | 87242095 | 91.32 % | 43848986 | 91.79 % | 43393109 | 90.84 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 474 | 0.00 % | 245 | 0.00 % | 229 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 8296373 | 8.68 % | 3920240 | 8.21 % | 4376133 | 9.16 % |
| Bisulfite_reads C2T | 44020542 | 46.08 % | 22085016 | 46.23 % | 21935526 | 45.92 % |
| Bisulfite_reads G2A | 43222027 | 45.24 % | 21764215 | 45.56 % | 21457812 | 44.92 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5618935 |
| Average Unique | 11.76 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3914969647 | 40.17 % | 1575438593 | 32.33 % | 2339531054 | 48.02 % |
| Base Counts Overall C | 980293579 | 10.06 % | 68280331 | 1.40 % | 912013248 | 18.72 % |
| Base Counts Overall G | 930701173 | 9.55 % | 886721545 | 18.20 % | 43979628 | 0.90 % |
| Base Counts Overall T | 3806035945 | 39.06 % | 2292298575 | 47.05 % | 1513737370 | 31.07 % |
| Base Counts Overall N | 112971740 | 1.16 % | 49746998 | 1.02 % | 63224742 | 1.30 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.7279221710105036 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 9626762 |
Mapping Quality
| Mapping Quality Histogram |
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Read Length
| Read Length | Reads |
| 101 | 47769471 |
| 101 | 47769471 |
Insert Size Plot
| Insert Size Histogram |
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