/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612423.41
BACK
SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612423.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 157061824 | 100.00 % | 78530912 | 100.00 % | 78530912 | 100.00 % |
| General Reads | 154427679 | 98.32 % | 77661003 | 98.89 % | 76766676 | 97.75 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 282364 | 0.18 % | 142298 | 0.18 % | 140066 | 0.18 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2351781 | 1.50 % | 727611 | 0.93 % | 1624170 | 2.07 % |
| Bisulfite_reads C2T | 80030967 | 50.96 % | 40237152 | 51.24 % | 39793815 | 50.67 % |
| Bisulfite_reads G2A | 74679076 | 47.55 % | 37566149 | 47.84 % | 37112927 | 47.26 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 59256912 |
| Average Unique | 75.46 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 6093351679 | 38.04 % | 2385176377 | 29.78 % | 3708175302 | 46.29 % |
| Base Counts Overall C | 1857111997 | 11.59 % | 77093427 | 0.96 % | 1780018570 | 22.22 % |
| Base Counts Overall G | 1889404318 | 11.79 % | 1832645113 | 22.88 % | 56759205 | 0.71 % |
| Base Counts Overall T | 6014232533 | 37.54 % | 3636538397 | 45.40 % | 2377694136 | 29.68 % |
| Base Counts Overall N | 166205521 | 1.04 % | 78699710 | 0.98 % | 87505811 | 1.09 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9946982126362587 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 71346280 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 78530912 |
| 101 | 78530912 |
Insert Size Plot
| Insert Size Histogram |
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