/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs

BACK

SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2052568976 100.00 % 1026284488 100.00 % 1026284488 100.00 %
General Reads 1958400625 95.41 % 986690669 96.14 % 971709956 94.68 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1645664 0.08 % 829589 0.08 % 816075 0.08 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 92522687 4.51 % 38764230 3.78 % 53758457 5.24 %
Bisulfite_reads C2T 999947696 48.72 % 503344620 49.05 % 496603076 48.39 %
Bisulfite_reads G2A 960098593 46.78 % 484175638 47.18 % 475922955 46.37 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 484151924
Average Unique 47.18 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 79367808569 38.33 % 31189087581 30.29 % 48178720988 46.28 %
Base Counts Overall C 24246823521 11.71 % 1929395976 1.87 % 22317427545 21.44 %
Base Counts Overall G 24376512834 11.77 % 22526479508 21.87 % 1850033326 1.78 %
Base Counts Overall T 76861421006 37.12 % 46293018091 44.95 % 30568402915 29.36 %
Base Counts Overall N 2231094912 1.08 % 1046319352 1.02 % 1184775560 1.14 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9365511569736714
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 606836887



Mapping Quality

Mapping Quality Histogram
K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612168.41
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612171.41
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612177.41
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612436.41
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612228.41
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612187.41
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612318.41
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612405.41
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612156.41
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612366.41
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612433.41
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612423.41
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612327.41
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612388.41
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612390.41
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612419.41
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612141.41