/REMC/A27342_5_lane_gembs

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SAMPLE A27342_5_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1798528578 100.00 % 899264289 100.00 % 899264289 100.00 %
General Reads 1657160819 92.14 % 828838685 92.17 % 828322134 92.11 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 7773736 0.43 % 3911590 0.43 % 3862146 0.43 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 133594023 7.43 % 66514014 7.40 % 67080009 7.46 %
Bisulfite_reads C2T 844935284 46.98 % 422678839 47.00 % 422256445 46.96 %
Bisulfite_reads G2A 819999271 45.59 % 410071436 45.60 % 409927835 45.58 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 434094992
Average Unique 48.27 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 69134295466 38.06 % 27155737561 29.90 % 41978557905 46.22 %
Base Counts Overall C 20423756614 11.24 % 2645151527 2.91 % 17778605087 19.57 %
Base Counts Overall G 24187841929 13.32 % 19848456969 21.85 % 4339384960 4.78 %
Base Counts Overall T 65935601935 36.30 % 40203734003 44.26 % 25731867932 28.33 %
Base Counts Overall N 1969890434 1.08 % 972613129 1.07 % 997277305 1.10 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9726753944239368
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 539247454



Mapping Quality

Mapping Quality Histogram
A27342_5_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A27342_5_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C2MEJACXX_3_2
C4BC4ACXX_7_2
C1T1JACXX_6_2
C2MEJACXX_4_2
C4BC4ACXX_6_2