/REMC/methylation/A27342_5_lane_gembs

BACK

SAMPLE A27342_5_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26761359 21258161 79.44 %
NonRefCpG 263456 174195 66.12 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A27342_5_lane_gembs_coverage_refCpG.png ./IMG//A27342_5_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A27342_5_lane_gembs_coverage_nonRefCpG.png ./IMG//A27342_5_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A27342_5_lane_gembs_quality_refcpg.png ./IMG//A27342_5_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A27342_5_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8707835 16.55 % 5471131 12.10 % 60278 12.09 % 20329 5.42 %
Intermediate (0.3-0.7) 7899627 15.01 % 6007551 13.28 % 89351 17.93 % 51728 13.79 %
Methylated (0.7-1) 36014375 68.44 % 33742922 74.62 % 348763 69.98 % 303029 80.79 %
Median Methylation 0.840 0.860 0.840 0.880