/Martin Hirst/PX0720_CCGTCC_10_lane_gembs/HF7JYCCXY_5_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 148402830 | 100.00 % | 74201415 | 100.00 % | 74201415 | 100.00 % |
| General Reads | 145110309 | 97.78 % | 73134476 | 98.56 % | 71975833 | 97.00 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 626455 | 0.42 % | 315636 | 0.43 % | 310819 | 0.42 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2666066 | 1.80 % | 751303 | 1.01 % | 1914763 | 2.58 % |
| Bisulfite_reads C2T | 74081560 | 49.92 % | 37334089 | 50.31 % | 36747471 | 49.52 % |
| Bisulfite_reads G2A | 71655204 | 48.28 % | 36116023 | 48.67 % | 35539181 | 47.90 % |
| Concept | Value |
|---|---|
| Unique Fragments | 27271402 |
| Average Unique | 36.75 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 7744150375 | 34.56 % | 3976778543 | 35.49 % | 3767371832 | 33.62 % |
| Base Counts Overall C | 3307554336 | 14.76 % | 1777171388 | 15.86 % | 1530382948 | 13.66 % |
| Base Counts Overall G | 3711168931 | 16.56 % | 1710471858 | 15.27 % | 2000697073 | 17.86 % |
| Base Counts Overall T | 7495537059 | 33.45 % | 3664910437 | 32.71 % | 3830626622 | 34.19 % |
| Base Counts Overall N | 150416629 | 0.67 % | 75081439 | 0.67 % | 75335190 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9702847725385905 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 45959764 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 74201415 |
| 150 | 74201415 |
| Insert Size Histogram |
|---|
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