/Martin Hirst/PX0720_CCGTCC_10_lane_gembs/HHFYJCCXY_4_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 162742470 | 100.00 % | 81371235 | 100.00 % | 81371235 | 100.00 % |
| General Reads | 158026809 | 97.10 % | 80164040 | 98.52 % | 77862769 | 95.69 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 670722 | 0.41 % | 339473 | 0.42 % | 331249 | 0.41 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4044939 | 2.49 % | 867722 | 1.07 % | 3177217 | 3.90 % |
| Bisulfite_reads C2T | 80638844 | 49.55 % | 40903185 | 50.27 % | 39735659 | 48.83 % |
| Bisulfite_reads G2A | 78058687 | 47.96 % | 39600328 | 48.67 % | 38458359 | 47.26 % |
| Concept | Value |
|---|---|
| Unique Fragments | 29334482 |
| Average Unique | 36.05 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8424715242 | 34.28 % | 4349505050 | 35.40 % | 4075210192 | 33.17 % |
| Base Counts Overall C | 3643246196 | 14.83 % | 1952495803 | 15.89 % | 1690750393 | 13.76 % |
| Base Counts Overall G | 4062978815 | 16.53 % | 1864705612 | 15.18 % | 2198273203 | 17.89 % |
| Base Counts Overall T | 8278668627 | 33.69 % | 4037950294 | 32.86 % | 4240718333 | 34.51 % |
| Base Counts Overall N | 164504090 | 0.67 % | 82399726 | 0.67 % | 82104364 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9704195837063303 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 48609598 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 81371235 |
| 150 | 81371235 |
| Insert Size Histogram |
|---|
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