/Martin Hirst/PX0821_AACCCC_6_lane_gembs/HL2VKCCXY_4_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 222414172 | 100.00 % | 111207086 | 100.00 % | 111207086 | 100.00 % |
| General Reads | 210743903 | 94.75 % | 106433063 | 95.71 % | 104310840 | 93.80 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4009766 | 1.80 % | 2027564 | 1.82 % | 1982202 | 1.78 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7660503 | 3.44 % | 2746459 | 2.47 % | 4914044 | 4.42 % |
| Bisulfite_reads C2T | 109526712 | 49.24 % | 55307814 | 49.73 % | 54218898 | 48.75 % |
| Bisulfite_reads G2A | 105226957 | 47.31 % | 53152813 | 47.80 % | 52074144 | 46.83 % |
| Concept | Value |
|---|---|
| Unique Fragments | 49642978 |
| Average Unique | 44.64 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 12141021847 | 36.15 % | 6259084786 | 37.27 % | 5881937061 | 35.03 % |
| Base Counts Overall C | 4727432302 | 14.08 % | 2530283032 | 15.07 % | 2197149270 | 13.08 % |
| Base Counts Overall G | 4935509648 | 14.70 % | 2277761729 | 13.56 % | 2657747919 | 15.83 % |
| Base Counts Overall T | 11555895059 | 34.41 % | 5613002933 | 33.43 % | 5942892126 | 35.39 % |
| Base Counts Overall N | 224681116 | 0.67 % | 112137506 | 0.67 % | 112543610 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9700679239267773 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 74982201 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 111207086 |
| 150 | 111207086 |
| Insert Size Histogram |
|---|
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