/Martin Hirst/PX0821_AACCCC_6_lane_gembs/HL2VKCCXY_6_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 221443688 | 100.00 % | 110721844 | 100.00 % | 110721844 | 100.00 % |
| General Reads | 209952797 | 94.81 % | 106041882 | 95.77 % | 103910915 | 93.85 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 3996685 | 1.80 % | 2020389 | 1.82 % | 1976296 | 1.78 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7494206 | 3.38 % | 2659573 | 2.40 % | 4834633 | 4.37 % |
| Bisulfite_reads C2T | 109079374 | 49.26 % | 55088107 | 49.75 % | 53991267 | 48.76 % |
| Bisulfite_reads G2A | 104870108 | 47.36 % | 52974164 | 47.84 % | 51895944 | 46.87 % |
| Concept | Value |
|---|---|
| Unique Fragments | 49448318 |
| Average Unique | 44.66 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 12101522010 | 36.19 % | 6241182141 | 37.33 % | 5860339869 | 35.05 % |
| Base Counts Overall C | 4706817524 | 14.08 % | 2521193019 | 15.08 % | 2185624505 | 13.07 % |
| Base Counts Overall G | 4893753765 | 14.64 % | 2257197005 | 13.50 % | 2636556760 | 15.77 % |
| Base Counts Overall T | 11511595518 | 34.43 % | 5587697733 | 33.42 % | 5923897785 | 35.43 % |
| Base Counts Overall N | 224308071 | 0.67 % | 111728546 | 0.67 % | 112579525 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9697734048010133 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 74666833 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 110721844 |
| 150 | 110721844 |
| Insert Size Histogram |
|---|
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