/Martin Hirst/PX0821_AACCCC_6_lane_gembs/HL2VKCCXY_7_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 222824126 | 100.00 % | 111412063 | 100.00 % | 111412063 | 100.00 % |
| General Reads | 211138597 | 94.76 % | 106648925 | 95.72 % | 104489672 | 93.79 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4016456 | 1.80 % | 2031262 | 1.82 % | 1985194 | 1.78 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7669073 | 3.44 % | 2731876 | 2.45 % | 4937197 | 4.43 % |
| Bisulfite_reads C2T | 109705581 | 49.23 % | 55409139 | 49.73 % | 54296442 | 48.73 % |
| Bisulfite_reads G2A | 105449472 | 47.32 % | 53271048 | 47.81 % | 52178424 | 46.83 % |
| Concept | Value |
|---|---|
| Unique Fragments | 49733862 |
| Average Unique | 44.64 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 12170853325 | 36.17 % | 6271956960 | 37.28 % | 5898896365 | 35.06 % |
| Base Counts Overall C | 4740932572 | 14.09 % | 2534685082 | 15.07 % | 2206247490 | 13.11 % |
| Base Counts Overall G | 4929591195 | 14.65 % | 2278710938 | 13.55 % | 2650880257 | 15.76 % |
| Base Counts Overall T | 11579772785 | 34.42 % | 5625742513 | 33.44 % | 5954030272 | 35.39 % |
| Base Counts Overall N | 225293149 | 0.67 % | 112126020 | 0.67 % | 113167129 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9697832855508479 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 75104705 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 111412063 |
| 150 | 111412063 |
| Insert Size Histogram |
|---|
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