/Martin Hirst/PX0821_AACCCC_6_lane_gembs

BACK

SAMPLE PX0821_AACCCC_6_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1356468588 100.00 % 678234294 100.00 % 678234294 100.00 %
General Reads 1285961323 94.80 % 649606751 95.78 % 636354572 93.83 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 24442590 1.80 % 12362226 1.82 % 12080364 1.78 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 46064675 3.40 % 16265317 2.40 % 29799358 4.39 %
Bisulfite_reads C2T 668167101 49.26 % 337485035 49.76 % 330682066 48.76 %
Bisulfite_reads G2A 642236812 47.35 % 324483942 47.84 % 317752870 46.85 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 301549064
Average Unique 44.46 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 74111107225 36.18 % 38227016846 37.33 % 35884090379 35.04 %
Base Counts Overall C 28849492424 14.08 % 15459651884 15.10 % 13389840540 13.07 %
Base Counts Overall G 30102944024 14.70 % 13861956250 13.54 % 16240987774 15.86 %
Base Counts Overall T 70387368634 34.36 % 34180275043 33.37 % 36207093591 35.35 %
Base Counts Overall N 1375844481 0.67 % 684478371 0.67 % 691366110 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9695628429529481
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 455690556



Mapping Quality

Mapping Quality Histogram
PX0821_AACCCC_6_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
PX0821_AACCCC_6_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
HL2VKCCXY_8_2
HL2VKCCXY_6_2
HJ353CCXY_8_2
HL2VKCCXY_5_2
HL2VKCCXY_4_2
HL2VKCCXY_7_2