/Martin Hirst/mapping_coverage/PX0821_AACCCC_6_lane_gembs
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SAMPLE PX0821_AACCCC_6_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1238375789 |
100% |
169898272177 |
100% |
| Mapped |
1217266444 |
98.30 % |
166731870427 |
98.14 % |
| Passed |
483351347 |
39.03 % |
56644605877 |
33.34 % |
| NotPassed |
733915097 |
59.26 % |
110087264550 |
64.80 % |
| |
|
|
|
|
| LowMAPQ |
535534644 |
43.24 % |
80330196600 |
47.28 % |
| MateUnmapped |
21109345 |
1.70 % |
3166401750 |
1.86 % |
| Duplicate |
48724995 |
3.93 % |
7308749250 |
4.30 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
13787514 |
1.11 % |
2068127100 |
1.22 % |
| |
|
|
|
|
| NotCorrectlyAligned |
135867944 |
10.97 % |
20380191600 |
12.00 % |
| Unmapped |
21109345 |
1.70 % |
3166401750 |
1.86 % |
Base Level Counts
| Bases |
# |
% |
| Total |
72453532650 |
100% |
| Passed |
52446146382 |
72.39 % |
| Trimmed |
1875713019 |
2.59 % |
| Clipped |
2726575782 |
3.76 % |
| Overlapping |
13082350991 |
18.06 % |
| LowQuality |
2322746476 |
3.21 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |