/Martin Hirst/methylation/PX0821_AACCCC_6_lane_gembs
BACK
SAMPLE PX0821_AACCCC_6_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26366028 |
20818918 |
78.96 % |
| NonRefCpG |
218680 |
49429 |
22.60 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5589997 |
10.85 % |
4489313 |
10.15 % |
113623 |
29.60 % |
17990 |
11.47 % |
| Intermediate (0.3-0.7) |
6863371 |
13.32 % |
4803554 |
10.86 % |
96714 |
25.20 % |
29207 |
18.63 % |
| Methylated (0.7-1) |
39073398 |
75.83 % |
34944319 |
78.99 % |
173483 |
45.20 % |
109588 |
69.90 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.880 |
|
0.890 |
|
0.630 |
|
0.840 |
|