/CEMT/methylation/A75622_1_lane_gembs

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SAMPLE A75622_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27119101 23049403 84.99 %
NonRefCpG 254135 182415 71.78 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A75622_1_lane_gembs_coverage_refCpG.png ./IMG//A75622_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A75622_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A75622_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A75622_1_lane_gembs_quality_refcpg.png ./IMG//A75622_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A75622_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5921395 11.04 % 4299895 8.85 % 50038 10.36 % 23294 5.97 %
Intermediate (0.3-0.7) 11504105 21.45 % 9846871 20.28 % 112242 23.24 % 80765 20.69 %
Methylated (0.7-1) 36204457 67.51 % 34416289 70.87 % 320628 66.40 % 286351 73.35 %
Median Methylation 0.820 0.840 0.810 0.840