/TFF-PPG/mapping_coverage/PX0587_CTATAC_10_lane_gembs
BACK
SAMPLE PX0587_CTATAC_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1612264377 |
100% |
222174746679 |
100% |
| Mapped |
1584064887 |
98.25 % |
217944823179 |
98.10 % |
| Passed |
588123515 |
36.48 % |
68553617379 |
30.86 % |
| NotPassed |
995941372 |
61.77 % |
149391205800 |
67.24 % |
| |
|
|
|
|
| LowMAPQ |
673813948 |
41.79 % |
101072092200 |
45.49 % |
| MateUnmapped |
28199490 |
1.75 % |
4229923500 |
1.90 % |
| Duplicate |
62187605 |
3.86 % |
9328140750 |
4.20 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
6850242 |
0.42 % |
1027536300 |
0.46 % |
| |
|
|
|
|
| NotCorrectlyAligned |
253089577 |
15.70 % |
37963436550 |
17.09 % |
| Unmapped |
28199490 |
1.75 % |
4229923500 |
1.90 % |
Base Level Counts
| Bases |
# |
% |
| Total |
88147221000 |
100% |
| Passed |
63188432517 |
71.69 % |
| Trimmed |
2234202177 |
2.53 % |
| Clipped |
4088186529 |
4.64 % |
| Overlapping |
15505417092 |
17.59 % |
| LowQuality |
3130982685 |
3.55 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |