/TFF-PPG/methylation/PX0587_CTATAC_10_lane_gembs
BACK
SAMPLE PX0587_CTATAC_10_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26453944 |
19830501 |
74.96 % |
| NonRefCpG |
431474 |
123731 |
28.68 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7905071 |
15.51 % |
6406623 |
15.20 % |
228861 |
30.44 % |
42774 |
13.01 % |
| Intermediate (0.3-0.7) |
9123646 |
17.90 % |
6160254 |
14.61 % |
188245 |
25.04 % |
60066 |
18.27 % |
| Methylated (0.7-1) |
33949622 |
66.60 % |
29589311 |
70.19 % |
334766 |
44.52 % |
225983 |
68.72 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.830 |
|
0.850 |
|
0.620 |
|
0.840 |
|