/TFF-PPG/PX0587_AGGCCG_10_lane_gembs

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SAMPLE PX0587_AGGCCG_10_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1495071412 100.00 % 747535706 100.00 % 747535706 100.00 %
General Reads 1436360595 96.07 % 726660400 97.21 % 709700195 94.94 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 11452287 0.77 % 5810070 0.78 % 5642217 0.75 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 47258530 3.16 % 15065236 2.02 % 32193294 4.31 %
Bisulfite_reads C2T 737458279 49.33 % 373025732 49.90 % 364432547 48.75 %
Bisulfite_reads G2A 710354603 47.51 % 359444738 48.08 % 350909865 46.94 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 314572489
Average Unique 42.08 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 78828201166 34.92 % 40725320910 36.08 % 38102880256 33.76 %
Base Counts Overall C 32656460765 14.47 % 17259035217 15.29 % 15397425548 13.64 %
Base Counts Overall G 35714206759 15.82 % 16558973038 14.67 % 19155233721 16.97 %
Base Counts Overall T 77042267773 34.13 % 37579662761 33.29 % 39462605012 34.96 %
Base Counts Overall N 1514646749 0.67 % 754899680 0.67 % 759747069 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9722326045350839
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 483048604



Mapping Quality

Mapping Quality Histogram
PX0587_AGGCCG_10_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
PX0587_AGGCCG_10_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
H3232CCXY_5_2
HHCHCCCXY_8_2
HHCHCCCXY_7_2
HHCHCCCXY_5_2
H3232CCXY_8_2
H3232CCXY_7_2
H3232CCXY_6_2
H323KCCXY_8_2
HHCHCCCXY_6_2
H3232CCXY_4_2