/TFF-PPG/mapping_coverage/PX0587_AGGCCG_10_lane_gembs
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SAMPLE PX0587_AGGCCG_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1388258032 |
100% |
190542457666 |
100% |
| Mapped |
1361363037 |
98.06 % |
186508208416 |
97.88 % |
| Passed |
522973568 |
37.67 % |
60749788066 |
31.88 % |
| NotPassed |
838389469 |
60.39 % |
125758420350 |
66.00 % |
| |
|
|
|
|
| LowMAPQ |
579638414 |
41.75 % |
86945762100 |
45.63 % |
| MateUnmapped |
26894995 |
1.94 % |
4034249250 |
2.12 % |
| Duplicate |
49398305 |
3.56 % |
7409745750 |
3.89 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
6136802 |
0.44 % |
920520300 |
0.48 % |
| |
|
|
|
|
| NotCorrectlyAligned |
203215948 |
14.64 % |
30482392200 |
16.00 % |
| Unmapped |
26894995 |
1.94 % |
4034249250 |
2.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
78380943750 |
100% |
| Passed |
55794052199 |
71.18 % |
| Trimmed |
1983287493 |
2.53 % |
| Clipped |
3592532119 |
4.58 % |
| Overlapping |
14038623565 |
17.91 % |
| LowQuality |
2972448374 |
3.79 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |