/CEMT/mapping_coverage/A77955_1_lane_gembs
BACK
SAMPLE A77955_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
898227339 |
100% |
115766927456 |
100% |
| Mapped |
888456159 |
98.91 % |
114301250456 |
98.73 % |
| Passed |
709156710 |
78.95 % |
87406333106 |
75.50 % |
| NotPassed |
179299449 |
19.96 % |
26894917350 |
23.23 % |
| |
|
|
|
|
| LowMAPQ |
93212522 |
10.38 % |
13981878300 |
12.08 % |
| MateUnmapped |
9771180 |
1.09 % |
1465677000 |
1.27 % |
| Duplicate |
74895160 |
8.34 % |
11234274000 |
9.70 % |
| BadOrientation |
68 |
0.00 % |
10200 |
0.00 % |
| LargeInsertSize |
5364 |
0.00 % |
804600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11186335 |
1.25 % |
1677950250 |
1.45 % |
| Unmapped |
9771180 |
1.09 % |
1465677000 |
1.27 % |
Base Level Counts
| Bases |
# |
% |
| Total |
106365088050 |
100% |
| Passed |
82148697068 |
77.23 % |
| Trimmed |
3031202160 |
2.85 % |
| Clipped |
236443638 |
0.22 % |
| Overlapping |
18722311306 |
17.60 % |
| LowQuality |
2226433878 |
2.09 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |