/CEMT/methylation/A77955_1_lane_gembs

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SAMPLE A77955_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27164961 22603987 83.21 %
NonRefCpG 278631 203778 73.14 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A77955_1_lane_gembs_coverage_refCpG.png ./IMG//A77955_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A77955_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A77955_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A77955_1_lane_gembs_quality_refcpg.png ./IMG//A77955_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A77955_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4781778 8.93 % 2241134 4.78 % 40676 7.69 % 11296 2.65 %
Intermediate (0.3-0.7) 6630589 12.38 % 4816850 10.27 % 73869 13.96 % 42287 9.92 %
Methylated (0.7-1) 42145227 78.69 % 39858836 84.96 % 414617 78.35 % 372894 87.44 %
Median Methylation 0.890 0.900 0.880 0.910