/Martin Hirst/PX0720_TGCTGG_10_lane_gembs/HCVFLCCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 190014234 | 100.00 % | 95007117 | 100.00 % | 95007117 | 100.00 % |
| General Reads | 185877537 | 97.82 % | 93703672 | 98.63 % | 92173865 | 97.02 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 973185 | 0.51 % | 490591 | 0.52 % | 482594 | 0.51 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3163512 | 1.66 % | 812854 | 0.86 % | 2350658 | 2.47 % |
| Bisulfite_reads C2T | 94997671 | 50.00 % | 47885735 | 50.40 % | 47111936 | 49.59 % |
| Bisulfite_reads G2A | 91853051 | 48.34 % | 46308528 | 48.74 % | 45544523 | 47.94 % |
| Concept | Value |
|---|---|
| Unique Fragments | 36299521 |
| Average Unique | 38.21 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 9905034591 | 34.52 % | 5095035562 | 35.52 % | 4809999029 | 33.53 % |
| Base Counts Overall C | 4218634334 | 14.70 % | 2244963396 | 15.65 % | 1973670938 | 13.76 % |
| Base Counts Overall G | 4688878730 | 16.34 % | 2171434755 | 15.14 % | 2517443975 | 17.55 % |
| Base Counts Overall T | 9686911174 | 33.76 % | 4739069049 | 33.03 % | 4947842125 | 34.49 % |
| Base Counts Overall N | 192690505 | 0.67 % | 95571905 | 0.67 % | 97118600 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9724743994985711 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 60280821 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 95007117 |
| 150 | 95007117 |
| Insert Size Histogram |
|---|
 |