/Martin Hirst/PX0720_TGCTGG_10_lane_gembs/HF7JYCCXY_5_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 159869064 | 100.00 % | 79934532 | 100.00 % | 79934532 | 100.00 % |
| General Reads | 156150867 | 97.67 % | 78746116 | 98.51 % | 77404751 | 96.84 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 815175 | 0.51 % | 411260 | 0.51 % | 403915 | 0.51 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2903022 | 1.82 % | 777156 | 0.97 % | 2125866 | 2.66 % |
| Bisulfite_reads C2T | 79773942 | 49.90 % | 40229803 | 50.33 % | 39544139 | 49.47 % |
| Bisulfite_reads G2A | 77192100 | 48.28 % | 38927573 | 48.70 % | 38264527 | 47.87 % |
| Concept | Value |
|---|---|
| Unique Fragments | 29909486 |
| Average Unique | 37.42 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8368677460 | 34.67 % | 4295243969 | 35.59 % | 4073433491 | 33.75 % |
| Base Counts Overall C | 3531542791 | 14.63 % | 1889754323 | 15.66 % | 1641788468 | 13.60 % |
| Base Counts Overall G | 3969031743 | 16.44 % | 1834376287 | 15.20 % | 2134655456 | 17.69 % |
| Base Counts Overall T | 8108927924 | 33.59 % | 3969858582 | 32.89 % | 4139069342 | 34.29 % |
| Base Counts Overall N | 162048746 | 0.67 % | 80881171 | 0.67 % | 81167575 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9707626970346198 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 49976244 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 79934532 |
| 150 | 79934532 |
| Insert Size Histogram |
|---|
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