/Martin Hirst/PX0720_TGCTGG_10_lane_gembs/HF7JYCCXY_6_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 161570834 | 100.00 % | 80785417 | 100.00 % | 80785417 | 100.00 % |
| General Reads | 157872023 | 97.71 % | 79603129 | 98.54 % | 78268894 | 96.88 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 828331 | 0.51 % | 418274 | 0.52 % | 410057 | 0.51 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2870480 | 1.78 % | 764014 | 0.95 % | 2106466 | 2.61 % |
| Bisulfite_reads C2T | 80684803 | 49.94 % | 40683591 | 50.36 % | 40001212 | 49.52 % |
| Bisulfite_reads G2A | 78015551 | 48.29 % | 39337812 | 48.69 % | 38677739 | 47.88 % |
| Concept | Value |
|---|---|
| Unique Fragments | 30353216 |
| Average Unique | 37.57 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8457722844 | 34.67 % | 4345385860 | 35.62 % | 4112336984 | 33.71 % |
| Base Counts Overall C | 3566485926 | 14.62 % | 1909954685 | 15.66 % | 1656531241 | 13.58 % |
| Base Counts Overall G | 4007715279 | 16.43 % | 1847613235 | 15.15 % | 2160102044 | 17.71 % |
| Base Counts Overall T | 8200769479 | 33.61 % | 4013894529 | 32.90 % | 4186874950 | 34.32 % |
| Base Counts Overall N | 164502406 | 0.67 % | 81749658 | 0.67 % | 82752748 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9714784632799185 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 50713769 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 80785417 |
| 150 | 80785417 |
| Insert Size Histogram |
|---|
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