/Martin Hirst/PX0720_TGCTGG_10_lane_gembs/HF7JYCCXY_7_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 161858248 | 100.00 % | 80929124 | 100.00 % | 80929124 | 100.00 % |
| General Reads | 158254687 | 97.77 % | 79751530 | 98.54 % | 78503157 | 97.00 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 834464 | 0.52 % | 421021 | 0.52 % | 413443 | 0.51 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2769097 | 1.71 % | 756573 | 0.93 % | 2012524 | 2.49 % |
| Bisulfite_reads C2T | 80898685 | 49.98 % | 40764798 | 50.37 % | 40133887 | 49.59 % |
| Bisulfite_reads G2A | 78190466 | 48.31 % | 39407753 | 48.69 % | 38782713 | 47.92 % |
| Concept | Value |
|---|---|
| Unique Fragments | 30441709 |
| Average Unique | 37.62 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8475265493 | 34.68 % | 4350903492 | 35.60 % | 4124362001 | 33.75 % |
| Base Counts Overall C | 3574932549 | 14.63 % | 1911871648 | 15.65 % | 1663060901 | 13.61 % |
| Base Counts Overall G | 4010560956 | 16.41 % | 1853043170 | 15.16 % | 2157517786 | 17.66 % |
| Base Counts Overall T | 8215188284 | 33.61 % | 4022639210 | 32.92 % | 4192549074 | 34.31 % |
| Base Counts Overall N | 164648166 | 0.67 % | 81840204 | 0.67 % | 82807962 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9719171572504915 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 50911472 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 80929124 |
| 150 | 80929124 |
| Insert Size Histogram |
|---|
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