/Martin Hirst/PX0720_TGCTGG_10_lane_gembs/HHFYJCCXY_4_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 173073096 | 100.00 % | 86536548 | 100.00 % | 86536548 | 100.00 % |
| General Reads | 167771144 | 96.94 % | 85188979 | 98.44 % | 82582165 | 95.43 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 865992 | 0.50 % | 439220 | 0.51 % | 426772 | 0.49 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4435960 | 2.56 % | 908349 | 1.05 % | 3527611 | 4.08 % |
| Bisulfite_reads C2T | 85705262 | 49.52 % | 43515795 | 50.29 % | 42189467 | 48.75 % |
| Bisulfite_reads G2A | 82931874 | 47.92 % | 42112404 | 48.66 % | 40819470 | 47.17 % |
| Concept | Value |
|---|---|
| Unique Fragments | 31745237 |
| Average Unique | 36.68 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8986966876 | 34.39 % | 4634866830 | 35.47 % | 4352100046 | 33.31 % |
| Base Counts Overall C | 3838982803 | 14.69 % | 2045208156 | 15.65 % | 1793774647 | 13.73 % |
| Base Counts Overall G | 4286403669 | 16.40 % | 1977594396 | 15.13 % | 2308809273 | 17.67 % |
| Base Counts Overall T | 8846728791 | 33.85 % | 4321715588 | 33.07 % | 4525013203 | 34.63 % |
| Base Counts Overall N | 174955357 | 0.67 % | 87633778 | 0.67 % | 87321579 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9705270582292749 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 52136148 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 86536548 |
| 150 | 86536548 |
| Insert Size Histogram |
|---|
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