/Martin Hirst/PX0720_TGCTGG_10_lane_gembs/HHFYJCCXY_5_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 173046716 | 100.00 % | 86523358 | 100.00 % | 86523358 | 100.00 % |
| General Reads | 167342430 | 96.70 % | 85173074 | 98.44 % | 82169356 | 94.97 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 869407 | 0.50 % | 442334 | 0.51 % | 427073 | 0.49 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4834879 | 2.79 % | 907950 | 1.05 % | 3926929 | 4.54 % |
| Bisulfite_reads C2T | 85469938 | 49.39 % | 43499119 | 50.27 % | 41970819 | 48.51 % |
| Bisulfite_reads G2A | 82741899 | 47.81 % | 42116289 | 48.68 % | 40625610 | 46.95 % |
| Concept | Value |
|---|---|
| Unique Fragments | 31540630 |
| Average Unique | 36.45 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8974492692 | 34.35 % | 4637967589 | 35.50 % | 4336525103 | 33.19 % |
| Base Counts Overall C | 3840981169 | 14.70 % | 2050162197 | 15.69 % | 1790818972 | 13.71 % |
| Base Counts Overall G | 4300804171 | 16.46 % | 1972493099 | 15.10 % | 2328311072 | 17.82 % |
| Base Counts Overall T | 8838587122 | 33.83 % | 4316851241 | 33.04 % | 4521735881 | 34.61 % |
| Base Counts Overall N | 175188962 | 0.67 % | 87552932 | 0.67 % | 87636030 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9708671050534402 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 51759946 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 86523358 |
| 150 | 86523358 |
| Insert Size Histogram |
|---|
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