/Martin Hirst/PX0720_TGCTGG_10_lane_gembs/HHFYJCCXY_6_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 164227358 | 100.00 % | 82113679 | 100.00 % | 82113679 | 100.00 % |
| General Reads | 158686426 | 96.63 % | 80686034 | 98.26 % | 78000392 | 94.99 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 815617 | 0.50 % | 414293 | 0.50 % | 401324 | 0.49 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4725315 | 2.88 % | 1013352 | 1.23 % | 3711963 | 4.52 % |
| Bisulfite_reads C2T | 81054035 | 49.35 % | 41206712 | 50.18 % | 39847323 | 48.53 % |
| Bisulfite_reads G2A | 78448008 | 47.77 % | 39893615 | 48.58 % | 38554393 | 46.95 % |
| Concept | Value |
|---|---|
| Unique Fragments | 29662207 |
| Average Unique | 36.12 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8517973340 | 34.35 % | 4396681837 | 35.46 % | 4121291503 | 33.24 % |
| Base Counts Overall C | 3643092457 | 14.69 % | 1951837962 | 15.74 % | 1691254495 | 13.64 % |
| Base Counts Overall G | 4034762947 | 16.27 % | 1870813360 | 15.09 % | 2163949587 | 17.45 % |
| Base Counts Overall T | 8435971557 | 34.02 % | 4096748049 | 33.04 % | 4339223508 | 35.00 % |
| Base Counts Overall N | 166530757 | 0.67 % | 83084321 | 0.67 % | 83446436 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9691615019077733 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 48550855 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 82113679 |
| 150 | 82113679 |
| Insert Size Histogram |
|---|
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